Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L0998_RS10880 Genome accession   NZ_CP090876
Coordinates   2215490..2216602 (-) Length   370 a.a.
NCBI ID   WP_000775113.1    Uniprot ID   P68863
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210490..2221602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS10870 (L0998_10870) gyrA 2210847..2213510 (-) 2664 WP_054189792.1 DNA gyrase subunit A -
  L0998_RS10875 (L0998_10875) gyrB 2213546..2215480 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  L0998_RS10880 (L0998_10880) recF 2215490..2216602 (-) 1113 WP_000775113.1 DNA replication/repair protein RecF Machinery gene
  L0998_RS10885 (L0998_10885) yaaA 2216599..2216844 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  L0998_RS10890 (L0998_10890) dnaN 2217225..2218358 (-) 1134 WP_000969810.1 DNA polymerase III subunit beta -
  L0998_RS10895 (L0998_10895) dnaA 2218636..2219997 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  L0998_RS10900 (L0998_10900) rpmH 2220728..2220865 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  L0998_RS10905 (L0998_10905) rnpA 2220986..2221339 (+) 354 WP_234873464.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=556022 L0998_RS10880 WP_000775113.1 2215490..2216602(-) (recF) [Staphylococcus aureus strain SAUR_BFS12]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=556022 L0998_RS10880 WP_000775113.1 2215490..2216602(-) (recF) [Staphylococcus aureus strain SAUR_BFS12]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGAAGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTATCGCTGAATTATTTACCTAGCCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATCAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P68863

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497