Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J8615_RS17370 Genome accession   NZ_CP072791
Coordinates   3497830..3498519 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain GS-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492830..3503519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8615_RS17335 (J8615_17325) fliW 3492921..3493352 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  J8615_RS17340 (J8615_17330) - 3493382..3493951 (-) 570 WP_048367096.1 DUF6470 family protein -
  J8615_RS17345 (J8615_17335) flgL 3494042..3494959 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  J8615_RS17350 (J8615_17340) flgK 3494971..3496488 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  J8615_RS17355 (J8615_17345) - 3496504..3496986 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J8615_RS17360 (J8615_17350) flgM 3497001..3497267 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J8615_RS17365 (J8615_17355) - 3497337..3497756 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  J8615_RS17370 (J8615_17360) comFC 3497830..3498519 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  J8615_RS17375 (J8615_17365) - 3498525..3498809 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  J8615_RS17380 (J8615_17370) comFA 3498867..3500252 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  J8615_RS17385 (J8615_17375) - 3500360..3501208 (-) 849 WP_043867471.1 DegV family protein -
  J8615_RS17390 (J8615_17380) degU 3501306..3501995 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J8615_RS17395 (J8615_17385) degS 3502072..3503235 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=555861 J8615_RS17370 WP_196769287.1 3497830..3498519(-) (comFC) [Bacillus velezensis strain GS-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=555861 J8615_RS17370 WP_196769287.1 3497830..3498519(-) (comFC) [Bacillus velezensis strain GS-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603