Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   LT978_RS10655 Genome accession   NZ_CP090838
Coordinates   2194310..2196187 (-) Length   625 a.a.
NCBI ID   WP_015388217.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189310..2201187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS10635 (LT978_10630) - 2189658..2190632 (-) 975 WP_003154101.1 acyltransferase domain-containing protein -
  LT978_RS10640 (LT978_10635) fabD 2190769..2191638 (-) 870 WP_015388215.1 ACP S-malonyltransferase -
  LT978_RS10645 (LT978_10640) - 2191953..2192630 (-) 678 WP_003154103.1 MBL fold metallo-hydrolase -
  LT978_RS10650 (LT978_10645) - 2193701..2193910 (+) 210 WP_015388216.1 hypothetical protein -
  LT978_RS10655 (LT978_10650) hexB 2194310..2196187 (-) 1878 WP_015388217.1 DNA mismatch repair endonuclease MutL Machinery gene
  LT978_RS10660 (LT978_10655) hexA 2196203..2198788 (-) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene
  LT978_RS10665 (LT978_10660) cotE 2198907..2199452 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  LT978_RS10670 (LT978_10665) ymcA 2199706..2200137 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70229.37 Da        Isoelectric Point: 5.8557

>NTDB_id=555681 LT978_RS10655 WP_015388217.1 2194310..2196187(-) (hexB) [Bacillus amyloliquefaciens strain TL106]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKTAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIEEESLPDEAGHG
VPPELGMPVTEAPVSDIPEPEEEADSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTNPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=555681 LT978_RS10655 WP_015388217.1 2194310..2196187(-) (hexB) [Bacillus amyloliquefaciens strain TL106]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATTGACGCAAACAGCACAGTCATTGAGATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGAGAGGGGGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAGC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACGCCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATTGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTGCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATCGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAAACAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGAGCCGGTCATAGAAGAAGAGTCCCTGCCGGATGAAGCGGGTCACGGA
GTGCCGCCGGAACTCGGCATGCCGGTAACGGAAGCACCTGTTTCCGATATTCCGGAGCCCGAAGAGGAAGCTGACTCTGA
AGAAATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAA
ACGGCTTGTATATCATTGACCAGCATGCGGCGCAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTC
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCA
GCATGAGCTTGAAAGCGTAGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAA
CTCCGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGAGAAACGACGAAATCAA
AGCGCTCTTGGACGACCTGCGCCGAACGACAAACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGTA
CGTATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.677

100

0.483