Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LT978_RS10670 Genome accession   NZ_CP090838
Coordinates   2199706..2200137 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain TL106     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194706..2205137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS10660 (LT978_10655) hexA 2196203..2198788 (-) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene
  LT978_RS10665 (LT978_10660) cotE 2198907..2199452 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  LT978_RS10670 (LT978_10665) ymcA 2199706..2200137 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  LT978_RS10675 (LT978_10670) miaB 2200140..2201669 (-) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LT978_RS10680 (LT978_10675) - 2201812..2202990 (-) 1179 WP_131258772.1 glycine C-acetyltransferase -
  LT978_RS10685 (LT978_10680) tdh 2203003..2204049 (-) 1047 WP_015388219.1 L-threonine 3-dehydrogenase -
  LT978_RS10690 (LT978_10685) spoVS 2204309..2204569 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=555683 LT978_RS10670 WP_003154113.1 2199706..2200137(-) (ymcA) [Bacillus amyloliquefaciens strain TL106]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=555683 LT978_RS10670 WP_003154113.1 2199706..2200137(-) (ymcA) [Bacillus amyloliquefaciens strain TL106]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916