Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   J9247_RS24975 Genome accession   NZ_CP072783
Coordinates   5347393..5347950 (+) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5342393..5352950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS24955 (J9247_24955) pilR 5343669..5345006 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  J9247_RS24960 (J9247_24960) thiO 5345052..5346146 (-) 1095 WP_210224836.1 glycine oxidase ThiO -
  J9247_RS24965 (J9247_24965) - 5346281..5346790 (+) 510 WP_033972918.1 Tfp pilus assembly protein FimT/FimU -
  J9247_RS24970 (J9247_24970) - 5346896..5347402 (+) 507 WP_210224837.1 Tfp pilus assembly protein FimT/FimU -
  J9247_RS24975 (J9247_24975) pilV 5347393..5347950 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  J9247_RS24980 (J9247_24980) pilW 5347947..5348771 (+) 825 WP_033976380.1 type 4a pilus minor pilin PilW -
  J9247_RS24985 (J9247_24985) pilX 5348768..5349355 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  J9247_RS24990 (J9247_24990) pilY1 5349367..5352852 (+) 3486 WP_210224838.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=555676 J9247_RS24975 WP_003125211.1 5347393..5347950(+) (pilV) [Pseudomonas aeruginosa strain LICME WGH-6]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=555676 J9247_RS24975 WP_003125211.1 5347393..5347950(+) (pilV) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989