Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LT978_RS09675 Genome accession   NZ_CP090838
Coordinates   1878797..1880575 (+) Length   592 a.a.
NCBI ID   WP_139890096.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1873797..1885575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS09620 (LT978_09615) - 1874104..1874307 (+) 204 WP_003153779.1 DUF6501 family protein -
  LT978_RS09625 (LT978_09620) - 1874373..1874513 (+) 141 WP_003153781.1 DUF4025 domain-containing protein -
  LT978_RS09630 (LT978_09625) - 1874806..1875150 (+) 345 WP_003153783.1 PH domain-containing protein -
  LT978_RS09635 (LT978_09630) - 1875195..1875428 (-) 234 WP_003153785.1 hypothetical protein -
  LT978_RS09640 (LT978_09635) - 1875425..1875697 (-) 273 WP_003153786.1 hypothetical protein -
  LT978_RS09645 (LT978_09640) - 1875768..1876250 (+) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  LT978_RS09650 (LT978_09645) - 1876237..1876470 (-) 234 WP_014305194.1 hypothetical protein -
  LT978_RS09655 (LT978_09650) gerPC 1876563..1876943 (+) 381 WP_139890095.1 spore germination protein GerPC -
  LT978_RS09660 (LT978_09655) - 1877027..1877518 (+) 492 WP_015388121.1 TraR/DksA C4-type zinc finger protein -
  LT978_RS09665 (LT978_09660) - 1877663..1878289 (+) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  LT978_RS09675 (LT978_09670) recQ 1878797..1880575 (+) 1779 WP_139890096.1 DNA helicase RecQ Machinery gene
  LT978_RS09680 (LT978_09675) - 1880811..1881683 (+) 873 WP_003153795.1 3D domain-containing protein -
  LT978_RS09685 (LT978_09680) - 1881842..1882234 (+) 393 WP_031306618.1 hypothetical protein -
  LT978_RS09690 (LT978_09685) - 1882266..1883243 (-) 978 WP_014305190.1 S66 peptidase family protein -
  LT978_RS09695 (LT978_09690) - 1883308..1883805 (-) 498 WP_003153799.1 N-acetyltransferase -
  LT978_RS09700 (LT978_09695) - 1884000..1884782 (+) 783 WP_014305188.1 VLRF1 family aeRF1-type release factor -
  LT978_RS09705 (LT978_09700) - 1884927..1885463 (+) 537 WP_003153801.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66885.45 Da        Isoelectric Point: 6.5672

>NTDB_id=555676 LT978_RS09675 WP_139890096.1 1878797..1880575(+) (recQ) [Bacillus amyloliquefaciens strain TL106]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKGRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=555676 LT978_RS09675 WP_139890096.1 1878797..1880575(+) (recQ) [Bacillus amyloliquefaciens strain TL106]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATT
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCCTTAACGGCGACGGCTACGCCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGGCCGGTTTATCGAGCGGTACCTCGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCGGATTGGCGGATGA
TGACAGAAAAGACCAGCAGGAGCGTTTTCTTAACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTTGTTTTACACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAGGAAGCCGGACGG
GCCGGGCGCGACGGTCTTAACAGCGAGTGTGTGCTCTTATTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGAAGCGTGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTTCTTATTTCAGATGAATATATCAGAATGGCG
GACGGCACATTTCCCACGCTTATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

HRDC domain (HRDC)

(519-584)

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

RQC domain (RQC)

(404-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.095

100

0.821