Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LT978_RS09255 Genome accession   NZ_CP090838
Coordinates   1809836..1810972 (-) Length   378 a.a.
NCBI ID   WP_003153656.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804836..1815972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS09210 (LT978_09205) - 1805164..1805742 (+) 579 WP_024085507.1 SMI1/KNR4 family protein -
  LT978_RS09215 (LT978_09210) - 1805848..1806108 (+) 261 WP_223151887.1 GNAT family N-acetyltransferase -
  LT978_RS09220 (LT978_09215) - 1806118..1806300 (+) 183 WP_223203798.1 GNAT family N-acetyltransferase -
  LT978_RS09225 (LT978_09220) - 1806514..1806852 (+) 339 WP_014305242.1 hypothetical protein -
  LT978_RS09230 (LT978_09225) - 1807114..1807203 (-) 90 Protein_1820 putative holin-like toxin -
  LT978_RS09235 (LT978_09230) - 1807427..1807894 (+) 468 WP_024085506.1 DUF4879 domain-containing protein -
  LT978_RS09240 (LT978_09235) - 1807900..1808259 (+) 360 WP_014305240.1 hypothetical protein -
  LT978_RS09245 (LT978_09240) - 1808320..1809339 (-) 1020 WP_043867221.1 hypothetical protein -
  LT978_RS09250 (LT978_09245) - 1809664..1809846 (-) 183 WP_003153655.1 hypothetical protein -
  LT978_RS09255 (LT978_09250) rapC 1809836..1810972 (-) 1137 WP_003153656.1 Rap family tetratricopeptide repeat protein Regulator
  LT978_RS09260 (LT978_09255) - 1811335..1811787 (+) 453 WP_088005415.1 hypothetical protein -
  LT978_RS09265 (LT978_09260) - 1812047..1812421 (-) 375 WP_107994343.1 YoqO family protein -
  LT978_RS20085 - 1812996..1813124 (+) 129 WP_024085501.1 hypothetical protein -
  LT978_RS09270 (LT978_09265) - 1813636..1814100 (-) 465 WP_025852481.1 hypothetical protein -
  LT978_RS09275 (LT978_09270) - 1814377..1814683 (-) 307 Protein_1830 ATP-dependent DNA ligase -
  LT978_RS09280 (LT978_09275) - 1814935..1815456 (-) 522 WP_024085499.1 hypothetical protein -
  LT978_RS09285 (LT978_09280) - 1815531..1815959 (-) 429 WP_088037353.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44598.15 Da        Isoelectric Point: 4.8529

>NTDB_id=555675 LT978_RS09255 WP_003153656.1 1809836..1810972(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=555675 LT978_RS09255 WP_003153656.1 1809836..1810972(-) (rapC) [Bacillus amyloliquefaciens strain TL106]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCCCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(191-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.296

100

0.463
  rapF Bacillus subtilis subsp. subtilis str. 168

45.669

100

0.46