Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J9247_RS19490 Genome accession   NZ_CP072783
Coordinates   4188520..4189155 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4183520..4194155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS19460 (J9247_19460) murB 4184618..4185637 (-) 1020 WP_121357953.1 UDP-N-acetylmuramate dehydrogenase -
  J9247_RS19465 (J9247_19465) - 4185634..4186098 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  J9247_RS19470 (J9247_19470) kdsB 4186098..4186862 (-) 765 WP_033968892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J9247_RS19475 (J9247_19475) - 4186862..4187047 (-) 186 WP_003091157.1 Trm112 family protein -
  J9247_RS19480 (J9247_19480) lpxK 4187085..4188083 (-) 999 WP_058017665.1 tetraacyldisaccharide 4'-kinase -
  J9247_RS19485 (J9247_19485) - 4188083..4188523 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  J9247_RS19490 (J9247_19490) exbB 4188520..4189155 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J9247_RS19495 (J9247_19495) comA 4189228..4191453 (-) 2226 WP_210224771.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J9247_RS19500 (J9247_19500) - 4191584..4192117 (+) 534 WP_033936888.1 DUF2062 domain-containing protein -
  J9247_RS19505 (J9247_19505) - 4192205..4193449 (-) 1245 WP_057389226.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=555666 J9247_RS19490 WP_003091163.1 4188520..4189155(-) (exbB) [Pseudomonas aeruginosa strain LICME WGH-6]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=555666 J9247_RS19490 WP_003091163.1 4188520..4189155(-) (exbB) [Pseudomonas aeruginosa strain LICME WGH-6]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTACTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81