Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LT978_RS00390 Genome accession   NZ_CP090838
Coordinates   69295..70089 (+) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 64295..75089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS00370 (LT978_00365) walR 64557..65264 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  LT978_RS00375 (LT978_00370) walK 65271..67106 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  LT978_RS00380 (LT978_00375) yycH 67096..68454 (+) 1359 WP_043867592.1 two-component system activity regulator YycH -
  LT978_RS00385 (LT978_00380) yycI 68441..69280 (+) 840 WP_060387273.1 two-component system regulatory protein YycI -
  LT978_RS00390 (LT978_00385) vicX 69295..70089 (+) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  LT978_RS00395 (LT978_00390) htrA 70176..71372 (+) 1197 WP_077723102.1 S1C family serine protease Regulator
  LT978_RS00400 (LT978_00395) - 71839..72051 (+) 213 WP_139889883.1 winged helix-turn-helix domain-containing protein -
  LT978_RS00405 (LT978_00400) - 72048..73466 (+) 1419 WP_139889884.1 HAMP domain-containing sensor histidine kinase -
  LT978_RS00410 (LT978_00405) - 73698..74705 (+) 1008 WP_014306163.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=555609 LT978_RS00390 WP_004393110.1 69295..70089(+) (vicX) [Bacillus amyloliquefaciens strain TL106]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=555609 LT978_RS00390 WP_004393110.1 69295..70089(+) (vicX) [Bacillus amyloliquefaciens strain TL106]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGACTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527