Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J6320_RS08695 Genome accession   NZ_CP072782
Coordinates   151401..152126 (-) Length   241 a.a.
NCBI ID   WP_213874599.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146401..157126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS08670 (J6320_08630) - 147554..148045 (+) 492 WP_047103746.1 type II secretion system protein M -
  J6320_RS08675 (J6320_08635) - 148047..148808 (+) 762 WP_017635007.1 type II secretion system protein N -
  J6320_RS08680 (J6320_08640) cysQ 149101..149928 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J6320_RS08685 (J6320_08645) nudE 149973..150542 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  J6320_RS08690 (J6320_08650) nfuA 150719..151303 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  J6320_RS08695 (J6320_08655) comF 151401..152126 (-) 726 WP_213874599.1 phosphoribosyltransferase family protein Machinery gene
  J6320_RS08700 (J6320_08660) bioH 152211..152978 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  J6320_RS08705 (J6320_08665) - 153103..153567 (+) 465 WP_005379316.1 hypothetical protein -
  J6320_RS08710 (J6320_08670) - 153672..155993 (-) 2322 WP_248487231.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27752.04 Da        Isoelectric Point: 9.5795

>NTDB_id=555610 J6320_RS08695 WP_213874599.1 151401..152126(-) (comF) [Vibrio alginolyticus strain HY9901]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFLRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=555610 J6320_RS08695 WP_213874599.1 151401..152126(-) (comF) [Vibrio alginolyticus strain HY9901]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAAAGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCTTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473