Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MESAU_RS19230 Genome accession   NC_019973
Coordinates   4022517..4023026 (+) Length   169 a.a.
NCBI ID   WP_015317710.1    Uniprot ID   L0KLK2
Organism   Mesorhizobium australicum WSM2073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4017517..4028026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MESAU_RS19210 (Mesau_03942) - 4020501..4020800 (-) 300 WP_041163828.1 hypothetical protein -
  MESAU_RS19215 (Mesau_03943) - 4020889..4021494 (-) 606 WP_015317707.1 ATP-dependent Clp protease proteolytic subunit -
  MESAU_RS19220 (Mesau_03944) - 4021519..4021980 (-) 462 WP_015317708.1 SRPBCC domain-containing protein -
  MESAU_RS19225 (Mesau_03945) - 4021977..4022291 (-) 315 WP_015317709.1 metalloregulator ArsR/SmtB family transcription factor -
  MESAU_RS19230 (Mesau_03946) ssb 4022517..4023026 (+) 510 WP_015317710.1 single-stranded DNA-binding protein Machinery gene
  MESAU_RS19235 (Mesau_03947) - 4023153..4023578 (+) 426 WP_015317711.1 OsmC family protein -
  MESAU_RS19240 (Mesau_03948) - 4023584..4024213 (-) 630 WP_015317712.1 MarC family protein -
  MESAU_RS19245 (Mesau_03949) - 4024295..4024687 (-) 393 WP_015317713.1 VOC family protein -
  MESAU_RS19250 (Mesau_03950) - 4024720..4025253 (-) 534 WP_015317714.1 hypothetical protein -
  MESAU_RS19255 (Mesau_03951) - 4025339..4026169 (+) 831 WP_015317715.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18299.25 Da        Isoelectric Point: 7.0235

>NTDB_id=55559 MESAU_RS19230 WP_015317710.1 4022517..4023026(+) (ssb) [Mesorhizobium australicum WSM2073]
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGADKYTTEVVLQKFRGELQMLDARGQGEGGQVGGSSRGSDFGQSSPNEGFNRGGGNAPRGGGGGGSS
RELDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=55559 MESAU_RS19230 WP_015317710.1 4022517..4023026(+) (ssb) [Mesorhizobium australicum WSM2073]
ATGGCGGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTCGGCGCTGACCCTGAAATCCGCCGCCTGAACTCGGGCGA
GCCGGTCGTCAACATCCGCATCGCGACGTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATAACGTCGTCATCTTCAATGAGGGCATCGCCAAGGTGGCGGAGCAGTATCTGAAGAAGGGCATGAAGGTTTATGTC
GAGGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGACCGGTGCCGACAAATACACGACCGAAGTCGTGCTGCAGAAATT
CCGTGGCGAGTTGCAGATGCTCGACGCGCGTGGCCAGGGTGAGGGCGGTCAGGTTGGCGGCAGCAGCCGTGGTTCCGATT
TCGGCCAGTCGAGCCCGAACGAAGGGTTCAACCGCGGTGGCGGCAACGCTCCCAGGGGCGGCGGTGGCGGTGGTTCGTCG
CGCGAACTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0KLK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.533
  ssb Vibrio cholerae strain A1552

47.802

100

0.515
  ssb Neisseria gonorrhoeae MS11

36.612

100

0.396
  ssb Neisseria meningitidis MC58

36.612

100

0.396

Multiple sequence alignment