Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SMUNUM_RS06965 Genome accession   NZ_AP014571
Coordinates   1434520..1437762 (-) Length   1080 a.a.
NCBI ID   WP_168747704.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429520..1442762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS06955 (SMNUM_1329) lacR 1429912..1430667 (-) 756 WP_002262461.1 transcriptional regulator LacR -
  SMUNUM_RS06960 (SMNUM_1330) rexA 1430892..1434530 (-) 3639 WP_168747701.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMUNUM_RS06965 (SMNUM_1331) rexB 1434520..1437762 (-) 3243 WP_168747704.1 ATP-dependent nuclease subunit B Machinery gene
  SMUNUM_RS06970 (SMNUM_1332) - 1438632..1438877 (-) 246 WP_002262921.1 SemiSWEET family transporter -
  SMUNUM_RS06975 (SMNUM_1333) - 1439052..1439378 (-) 327 WP_002262922.1 hypothetical protein -
  SMUNUM_RS06980 (SMNUM_1334) - 1439742..1439912 (-) 171 Protein_1346 phenylalanine--tRNA ligase subunit beta -
  SMUNUM_RS06985 (SMNUM_1335) - 1440227..1441507 (-) 1281 WP_002265226.1 MATE family efflux transporter -
  SMUNUM_RS06990 (SMNUM_1336) - 1441504..1441827 (-) 324 WP_002265227.1 PqqD family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124098.19 Da        Isoelectric Point: 5.8045

>NTDB_id=55557 SMUNUM_RS06965 WP_168747704.1 1434520..1437762(-) (rexB) [Streptococcus mutans LP13]
MKLLYTDIPYNITEILAEEAQIAAKAGKRVFYIAPNSLSFEKERAVLETLPERASFAITITRFEQMARYFVLNDIHQGET
IDDNGLAMVFYRALSSFSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAEKQEDLIKIFTEVETILSA
GHFDNQSKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLLYEKGVDIIIGTYISQKAYRSTFSNENVYQAS
LDFIRGLAGKFQTKPEYVVSKQEALPAFTKLSQLFESCHDFSDSQLVLTDKDKEHVTIWDVINQKEEVEHVAKSIRRKLY
EGHRYKDILVLLGDADAYKLQIGKIFDKYEIPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQ
NQLDKLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQTQKGDSILQKLTNFLEAISLTNNF
SKLIQGVNDIEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNK
FVFALGMTQSHFPKIVQNKSLISDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDN
TSSYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSVAVRYLRQKLAKEGLTIPE
VNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLYFLQYILGLQELETIHPDARNHGTYLHRVFELVMQDQSI
DDFDSKLNRAIDITNHEDSFHLVYNEDEESRYALGILEDIARSTATILKGDNPVQVESEEEAFELMLDQTVKIRGVIDRI
DRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLNETDKIFGAMYLHMQEPKTDLANMKSIEKIPETV
HKNLSYKGLFLEDEKAHLANGKYHLHDAVYSQKEVDLLLDYNKRLYRSAAKQIRKGNFLINPYSQDGKSVQGEQLKAITH
FEADRHMPYARKLYQLPRKEKRQGFLALMQSKKEEEGNDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=55557 SMUNUM_RS06965 WP_168747704.1 1434520..1437762(-) (rexB) [Streptococcus mutans LP13]
ATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGG
TAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGG
CTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACGCTATTTTGTTTTAAATGATATTCATCAGGGCGAAACC
ATTGATGATAATGGACTTGCCATGGTTTTTTATCGTGCTTTATCCAGTTTTTCAGACCAAGATTTGCGTGTTTTTGGGCG
TCTTAAGCAAGATGCTCATTTTATCAATCAATTGGTGGATTTGTATAAGGAACTCAAGGCTTCTAATCTGACTGTCTTAG
AATTAAATCAGCTAAATTCGGCTGAAAAGCAGGAAGATTTGATTAAGATTTTTACAGAGGTTGAAACCATTTTAAGTGCT
GGCCATTTTGATAATCAAAGCAAGATTGCCTTCTTTGCACAACAGATCAAATTCGGTCATTTAGATACGGCTTTGCAGGA
TTTGACAATTGTTGTTGATGGTTTCACACGTTTTTCTGCTGAAGAAGAAAACCTGATAGGACTGTTATATGAAAAAGGTG
TTGACATTATCATTGGGACTTATATTAGTCAAAAAGCTTATCGTTCAACTTTTTCGAATGAGAATGTCTATCAGGCTAGT
CTTGATTTCATTCGTGGTTTGGCTGGTAAATTTCAAACCAAACCAGAATATGTGGTATCAAAGCAAGAAGCTTTGCCTGC
CTTTACCAAACTTTCTCAGCTATTTGAAAGTTGTCATGATTTTTCGGACAGTCAGCTGGTCTTGACAGATAAGGACAAGG
AACATGTAACTATCTGGGATGTCATTAATCAAAAAGAAGAAGTGGAACATGTTGCTAAGAGCATTCGCCGGAAACTCTAT
GAAGGTCATCGTTACAAGGATATTTTGGTCCTTCTTGGGGATGCGGATGCCTATAAACTGCAGATTGGCAAGATTTTTGA
TAAGTATGAAATTCCCTATTATTTTGGCAAAGCGGAGTCCATGAGTTCGCACCCGCTGGTTCATTTTGTGGATTCTTTGG
AGCGGGTTAAACGTTATAATTTTCGTGCTGAGGATGTCATGAATCTGCTCAAATCAGGCCTATATGGCAAAATCAGGCAA
AATCAGTTAGATAAATTGGAGCAGTATGTCATTTATGCTGATATTAAAGGAAAAACAAAGTTTTTTAAGGACTTTACGCT
AGATAATCATGGGCAATTTGATCTAAAAGCCTTAAATAAACTGCGGGCAGAAGTCATGTCACCTTTACAAGAGCTGGTTA
AAATACAGACTCAAAAGGGAGACAGTATCCTGCAAAAATTGACCAACTTTTTAGAAGCCATTTCTTTAACGAATAATTTT
TCAAAATTAATCCAAGGTGTCAATGATATTGAGCAGGAAAAGAACGAGCAAGTTTGGAAAACTTTTACAGTTATTTTAGA
GCAATTTCATACGATTTTTGGACAAGAAAAAATGAAGTTGGCTGATTTTCTGGCACTCTTACGCAGCGGCATGCTGGCGG
CTGATTATCGGACGGTTCCTGCTAGTGTTGATGTTGTGACAGTTAAGTCTTATGATTTGGTGGAGCCCCATAGCAATAAA
TTTGTTTTTGCTCTGGGAATGACCCAGTCTCATTTTCCTAAAATTGTCCAAAATAAGAGTCTTATTTCGGATGAAGAACG
TGCAAAAATCAATGAAGCAACTCCTGACAATCGTCGTTTTGATATTGTCACTAAGGAAAATCTCAAGAAAAATCATTTCA
CCGCCCTGTCACTCTTCAATGCGGCCACTCAGGAATTGGTCTTAACCTTGCCGCAGATTTTAAACGAGGCAGAGGACAAC
ACCTCCTCCTATTTGCTTGAATTGCAAGATATGGGTGTGCCAGTTGTCGAAAAGGGGCGCAATCGTTTAGCTGCGGATCC
AGAAGATATTGGCAATTACAAGGCGCTTTTGTCGCGTGTGATTGAACTTAACCGCTCTGCTATTGACCAAGAATTATCTA
AAGAAGAGCAGACCTTTTGGTCAGTTGCTGTTCGCTATTTACGCCAAAAATTGGCAAAAGAAGGACTTACGATTCCTGAA
GTGAACGATAAGATGCAGACCAAGCAGGTTGCTGCAGAGGTTATGGCAGCACGTTTTCCAATAGATCAACCTTTAAATCT
ATCATCGTCTGCCCTGACAACTTTTTACAATAATCAGTATCTCTATTTCCTTCAATATATCCTTGGCTTGCAAGAGCTTG
AAACGATTCATCCTGATGCTAGAAATCATGGGACTTATTTGCACCGCGTGTTTGAATTGGTTATGCAAGATCAATCTATT
GATGATTTTGACAGTAAATTAAATCGTGCCATTGATATAACCAACCATGAGGATAGCTTTCACTTGGTTTATAATGAAGA
TGAGGAAAGTCGCTATGCTTTGGGTATTTTAGAAGATATTGCTCGTAGTACGGCTACCATTTTAAAAGGGGATAATCCTG
TTCAGGTAGAAAGTGAAGAAGAAGCCTTTGAGTTAATGCTGGATCAGACTGTTAAAATCAGAGGGGTTATTGATCGCATT
GATCGCTTGTCAGATGGCAGTTTAGGAATTGTTGATTATAAATCAAGTAAAAATACCTTTGATCTGCAAAAATTTTACAA
TGGACTCAGTCCGCAGTTAGTGACTTATATAGAAGCTCTTCGGTCTTGTAAAAATTTGAATGAGACAGATAAGATTTTTG
GAGCCATGTATCTTCATATGCAGGAACCTAAAACTGATTTAGCCAATATGAAATCCATCGAAAAAATTCCGGAAACGGTT
CATAAGAATTTAAGTTATAAGGGACTCTTTTTAGAAGATGAAAAAGCACATTTGGCTAATGGGAAATACCATTTGCATGA
TGCTGTCTATAGTCAAAAAGAAGTTGATTTGCTGCTTGATTATAATAAAAGACTCTATCGCAGTGCCGCAAAGCAAATCA
GAAAAGGAAACTTTCTCATTAACCCCTACAGTCAGGATGGCAAATCTGTTCAGGGAGAACAGCTGAAGGCTATTACACAT
TTTGAAGCAGATCGCCACATGCCTTATGCTCGTAAACTTTATCAACTGCCACGCAAAGAAAAACGTCAGGGTTTCTTGGC
GTTAATGCAGTCTAAAAAAGAGGAGGAAGGCAATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.175

99.352

0.439

Multiple sequence alignment