Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SMUNUM_RS06960 Genome accession   NZ_AP014571
Coordinates   1430892..1434530 (-) Length   1212 a.a.
NCBI ID   WP_168747701.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425892..1439530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS06925 (SMNUM_1323) - 1425893..1426195 (-) 303 WP_002265222.1 PTS fructose transporter subunit IIB -
  SMUNUM_RS06930 (SMNUM_1324) - 1426210..1426683 (-) 474 WP_002265223.1 PTS sugar transporter subunit IIA -
  SMUNUM_RS06935 (SMNUM_1325) lacD 1426700..1427680 (-) 981 WP_002276114.1 tagatose-bisphosphate aldolase -
  SMUNUM_RS06940 (SMNUM_1326) lacC 1427685..1428617 (-) 933 WP_168747699.1 tagatose-6-phosphate kinase -
  SMUNUM_RS06945 (SMNUM_1327) lacB 1428636..1429151 (-) 516 WP_002262464.1 galactose-6-phosphate isomerase subunit LacB -
  SMUNUM_RS06950 (SMNUM_1328) lacA 1429177..1429605 (-) 429 WP_002262463.1 galactose-6-phosphate isomerase subunit LacA -
  SMUNUM_RS06955 (SMNUM_1329) lacR 1429912..1430667 (-) 756 WP_002262461.1 transcriptional regulator LacR -
  SMUNUM_RS06960 (SMNUM_1330) rexA 1430892..1434530 (-) 3639 WP_168747701.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMUNUM_RS06965 (SMNUM_1331) rexB 1434520..1437762 (-) 3243 WP_168747704.1 ATP-dependent nuclease subunit B Machinery gene
  SMUNUM_RS06970 (SMNUM_1332) - 1438632..1438877 (-) 246 WP_002262921.1 SemiSWEET family transporter -
  SMUNUM_RS06975 (SMNUM_1333) - 1439052..1439378 (-) 327 WP_002262922.1 hypothetical protein -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139323.04 Da        Isoelectric Point: 4.8594

>NTDB_id=55556 SMUNUM_RS06960 WP_168747701.1 1430892..1434530(-) (rexA) [Streptococcus mutans LP13]
MTFKSFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFT
VKAAGELKERLEKKITEQLRLTNDNVLKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLK
NDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV
KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVT
VAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR
QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLV
AKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL
RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI
YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKG
LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL
YVAMTRSEKKLYLVGKGSQEKLGDKYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG
SLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKF
ELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV
YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI
LLGGEKLEVVEI

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=55556 SMUNUM_RS06960 WP_168747701.1 1430892..1434530(-) (rexA) [Streptococcus mutans LP13]
ATGACCTTTAAATCATTTTTAACAGATCAAGAAATAGCTTCCTTACAAATTCAAGAAGCACAGTCTGATAAGAAACAAAA
ACGAACGCCTGAGCAAATTGAGGCTATTTACACTTCAGGAACTAATATTTTGGTTTCTGCCTCTGCTGGTTCAGGAAAAA
CCTTTGTGATGATTGAGCGGATTATGGATAAAATTCTGCGTGGTGTAACGATTGATCAGCTTTTTATTTCCACCTTTACT
GTTAAGGCTGCTGGTGAGCTTAAGGAGCGTTTAGAAAAGAAAATCACTGAGCAATTGCGTTTGACAAATGACAATGTCCT
CAAACAATTTCTCAGCGAGCAACTCTTGGGATTGCAGACTGCGGATATTGGAACCATGGATGCCTTTACCCAAAAATTAG
TGACACAGTACGGCTATACCTTGGGAATTTCACCGAATTTTCGAATTTTACAAGATAAAAGCGAGCAGGATCTTCTTAAA
AATGATGTCTTTGACGACCTTTTTACTGATTACAGAACTGGCGATCAAGCAGAGCTTTTCACTAAGCTTGTTAGGAATTT
TGCTGGAAATCGAAAAGATTCGAGCAATTTTAGACAAATCATTTACAAAATTTATGATTTCAGTCAGGCAACCGATAATC
CCCAAAGATGGCTTTTGGAGAATTTCTTAAAAGGAGCCAATACCTATAAGGATTTTTCAGCTATTCCTGAACAAGAAGTG
AAAGACTTTTTGAATACTTTGCAGGAAACTGCTCTCGCTCTTCGTGATGTGACGGATTTAGAAGATTACAAGCAAGTAAC
GGCTAAAGGAACTCCAACAGCAGCTTATCAAAGGCACCTTAAAATGATTGAGCAGCTGCAGGATTGGGTCTTGCATTTTG
ACAGTCTATATGGGCGAGATGGTCTGGGGAAATTAGCAAATGACATTGCAACACTCATTCCATCTGGTAACGATGTGACA
GTAGCAGGAGTTAAATATCCTGTCTTTCGCAGTTTGCACAGTCGCTTAAGAGGACTAAAACACTTGGAAACAATTTTCAA
GTATCAGGATCAAAGTCTGCCTTTGTTGCAAGTACTGCAATCTTTTACCCTTGATTTTTCAAAACAATATCTGCAAGCAA
AGATGCAGGAAAATGCCTTTGAGTTTTCAGACATTGCACATTTTGCTATCCAGATTTTAGAAGAAAATGATGCTATTCGT
CAGCTTTATATAGATAAGTATCACGAAGTCATGGTGGATGAATATCAGGATAATAATCACACCCAAGAGCGCATGTTGGA
ACTTTTATCTAATGGGCGCAATCGCTTCATGGTAGGAGATATTAAGCAGTCTATCTATCGGTTTCGTCAGGCAGATCCAC
AGATTTTTAATCAAAAATTTAAGGATTTTCAAGAACATCCAGAGCATGGAAAACTCATTCTCTTAAAAGAGAACTTTCGG
AGTCAGTCAGAAGTCTTAGATGCTACCAATAGTGTTTTTACGCATCTTATGGATGAAACGGTTGGAGAAATTCTCTACGA
TGATACCCATCAGCTTGTGGCTGGCAGTTCAGCTCAGAAAATTCCTTATCCGCAAAATGAAACACAAGTCCTCATCTATG
ATACAAAGGATCAGCAAAATCAAGATCTTGCTGTAGAAGATGATAGTAATCAAATCAGTCTAGGTGAGGTCAAATTGGTT
GCTAAGGAGATTATTCGCCTTCATAATGAAGAAAAGGTTCAGTTTGAAGATATTACCTTGCTTGTCTCATCGCGGACACG
CAATGATGGTATCTTGCAAACATTTGATGATTATGGCATTCCTTTGGTGACTGATGGTGGTGAACAAAACTATCTGAAAT
CAGTGGAAGTTATGGTCATGTTGGATACTCTGCGTTCTATTGATAATCCTCTCAATGATTATGCTCTAGTAGCTCTTTTG
CGTTCACCTATGTTTGCTTTTGATGAGGATGACTTGGCTCGTCTAGCTCTGCAAAATCTACCAGATCAACACAAACAAAA
TCTTTATGAAAAGATGGAGAATGCCAGAAATGGCCAAGGCCAGCAAGTTCAGTTGATCACAGAAGCATTGTCTGCCAAAT
TGGATGCTTTCTTTGAAACTTTCCTCAGTTGGCGTGAGTTTAGTCTCTTAAATTCGCTCTATGATTTGATTTGGAAAATT
TATAATGATAAGTTTTACTATGATTATGTGGGAAGTTTACCAAAATCTGAACAGCGCCAAGCCAATCTTTATGCTCTAGC
CCTGCGTGCCGATAACTTTGAGAAAACAGGTTTTAAGGGGTTGTCGCGCTTCATTCGCATGATTGACAAAATTCTAGAAA
ATCAAAATGACTTGGCTGATGTTGAAGTCGCTTTACCTAAAAATGCAGTGACGCTGATGACGATTCATAAGAGTAAGGGA
TTGGAATTTAAATATGTCTTTATTCTTAATATTGATAAAAAATTTAGCATTCAAGATATGACATCACCCTTAATCTTATC
GCGGCAAAACGGTGTTGGTATCAAGTATATTGCTGATATGAAAGAAGAACTAGAGGAAAAATTATTGCCGACAGTTAAAG
TCAGCATGGATACTCTTCCTTATCAACTGAATAAGCGTGAGCTTCGCCTGGCAACCCTATCTGAACAAATGCGATTGCTT
TATGTTGCCATGACACGATCTGAAAAGAAACTTTACTTGGTCGGAAAAGGCAGTCAGGAAAAATTAGGGGATAAGTATGA
TGGCAAATCAGAAAACAATCATTTGCCAGTAGCTGATCGTGAACACTATTTGACTTTTCAGGATTGGCTTTTGGCGATTG
AAGCTGCTTATGCTGCCGATGAACTTCATTTTAAAACAAGTTTTATAACGGATGAAGACTTAACAGAAGATAAAATGGGA
AGTTTAGAAGCAGAGCAGGCTTATGATGCGGATAATCTTAAGGATAATCGGCAATCAGATGATATTGCGCGTGCTTTAGA
TATGTTAGAAGCAGTTGAAAAATTAAATCAGCACTATAAGGCTGCTATCCATTTACCAACTGTTCGTACGCCAAGTCAGA
TCAAAAAATTTTATGAGCCTGTTATGGAAACAGAAGGTGTAGAGGTGATGCAAACTTCCTATCAGACTAAACCAAAGTTT
GAGCTGCCTCAATTTTCAAAAAAGGCGAAACAAGATCCAACAGCTCTTGGTTCAAGTGTTCATGAACTTATGCAGCGGCT
TCATTTGAGTGAACAGGTTAGTCTTGAAGATATTTTAACTGCTCTGGCAGAACTATCTGTAGAAGAAAATGTTAAAAAAG
CTATTCAGGTTGATAAGATTTTGCATTTCTTCCAGACCAGCCAACTGGGGAAACTCATTCAAGCAAATGCTGACAAGGTC
TATCGTGAAGCACCCTTTGCTATGCTGCAAGCGGATCCTGCAAGCGGAGAAGACTATGTCGTGCGGGGGATTATTGACGG
TTACATTCTTTTTGATAATCGGATTGTCCTCTTTGATTATAAAACAGATAAATTCACTAATAGTCAAGCTATTAAAGAGC
GTTACCGAGGTCAGATGACACTTTATGCTCAAGCTTTGAGCCAATCCTATAATATCCAACAAGTAGACAGTTATTTAATT
CTATTAGGCGGTGAAAAATTAGAAGTTGTGGAAATTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1041-1191)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-893)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.85

100

0.535

Multiple sequence alignment