Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LL229_RS02700 Genome accession   NZ_CP090823
Coordinates   480052..480864 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain 229     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 475052..485864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL229_RS02675 (LL229_0491) ytpR 475278..475898 (+) 621 WP_081172122.1 YtpR family tRNA-binding protein -
  LL229_RS02680 (LL229_0492) nox 476067..477407 (+) 1341 WP_021214845.1 H2O-forming NADH oxidase -
  LL229_RS02685 (LL229_0493) ssbB 477497..477886 (+) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  LL229_RS02690 (LL229_0494) groES 478006..478290 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL229_RS02695 (LL229_0495) groL 478378..480006 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LL229_RS02700 (LL229_0496) vicX 480052..480864 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL229_RS02705 (LL229_0497) vicK 481035..482477 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL229_RS02710 (LL229_0498) yycF 482470..483171 (-) 702 WP_003131580.1 response regulator YycF -
  LL229_RS02715 (LL229_0499) tmk 483349..483984 (+) 636 WP_003131575.1 dTMP kinase -
  LL229_RS02720 (LL229_0500) - 484117..484977 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LL229_RS02725 (LL229_0501) yaaT 485029..485811 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=555459 LL229_RS02700 WP_003131583.1 480052..480864(-) (vicX) [Lactococcus lactis subsp. lactis strain 229]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=555459 LL229_RS02700 WP_003131583.1 480052..480864(-) (vicX) [Lactococcus lactis subsp. lactis strain 229]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685