Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J8Y17_RS19895 Genome accession   NZ_CP072769
Coordinates   3837604..3838038 (-) Length   144 a.a.
NCBI ID   WP_211479640.1    Uniprot ID   -
Organism   Bacillus cereus strain BC07     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3832604..3843038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS19880 (J8Y17_19880) - 3833373..3833930 (+) 558 WP_000062080.1 PadR family transcriptional regulator -
  J8Y17_RS19885 (J8Y17_19885) metE 3834853..3837141 (+) 2289 WP_001007635.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  J8Y17_RS19890 (J8Y17_19890) comJ 3837178..3837567 (-) 390 WP_000424033.1 competence protein ComJ -
  J8Y17_RS19895 (J8Y17_19895) nucA/comI 3837604..3838038 (-) 435 WP_211479640.1 DNA-entry nuclease Machinery gene
  J8Y17_RS19900 (J8Y17_19900) - 3838275..3839024 (+) 750 WP_000388474.1 DUF3967 domain-containing protein -
  J8Y17_RS19905 (J8Y17_19905) kinB 3839078..3840352 (-) 1275 WP_088668303.1 sporulation sensor histidine kinase KinB -
  J8Y17_RS19910 (J8Y17_19910) - 3840662..3840862 (+) 201 WP_000929284.1 hypothetical protein -
  J8Y17_RS19915 (J8Y17_19915) - 3840986..3842149 (+) 1164 WP_000434590.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15998.32 Da        Isoelectric Point: 8.4331

>NTDB_id=555460 J8Y17_RS19895 WP_211479640.1 3837604..3838038(-) (nucA/comI) [Bacillus cereus strain BC07]
MKQLKGIIISIIAILSILVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAVKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=555460 J8Y17_RS19895 WP_211479640.1 3837604..3838038(-) (nucA/comI) [Bacillus cereus strain BC07]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTTTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACAAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGAGATATCCAGAAACAGGGA
AACATATTACGGATGCGGTAAAGGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAG
TTATCGTTAGCCCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCAGCAGATAATCGAGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549