Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   L0025_RS25270 Genome accession   NZ_CP090648
Coordinates   5325826..5326470 (+) Length   214 a.a.
NCBI ID   WP_050480601.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1616     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5320826..5331470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0025_RS25255 (L0025_25250) - 5321461..5322675 (+) 1215 WP_003113355.1 MFS transporter -
  L0025_RS25260 (L0025_25255) - 5322691..5323719 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  L0025_RS25265 (L0025_25260) pqsH 5324337..5325485 (+) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  L0025_RS25270 (L0025_25265) letA 5325826..5326470 (+) 645 WP_050480601.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  L0025_RS25275 (L0025_25270) uvrC 5326471..5328297 (+) 1827 WP_003162160.1 excinuclease ABC subunit UvrC -
  L0025_RS25280 (L0025_25275) pgsA 5328331..5328891 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23668.62 Da        Isoelectric Point: 6.1073

>NTDB_id=555335 L0025_RS25270 WP_050480601.1 5325826..5326470(+) (letA) [Pseudomonas aeruginosa strain PA1616]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLFEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=555335 L0025_RS25270 WP_050480601.1 5325826..5326470(+) (letA) [Pseudomonas aeruginosa strain PA1616]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTTCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.028

98.598

0.533
  letA Legionella pneumophila strain ERS1305867

54.028

98.598

0.533