Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LZG50_RS05705 Genome accession   NZ_CP090611
Coordinates   1165009..1165746 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate DCE7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160009..1170746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG50_RS05675 (LZG50_05675) yfiL 1160168..1160533 (-) 366 WP_096891253.1 DUF2799 domain-containing protein -
  LZG50_RS05680 (LZG50_05680) aroF 1160743..1161813 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LZG50_RS05685 (LZG50_05685) tyrA 1161824..1162945 (+) 1122 WP_000225222.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LZG50_RS05690 (LZG50_05690) pheA 1162988..1164148 (-) 1161 WP_000200113.1 bifunctional chorismate mutase/prephenate dehydratase -
  LZG50_RS05695 (LZG50_05695) pheL 1164247..1164294 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LZG50_RS05700 (LZG50_05700) raiA 1164398..1164739 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LZG50_RS05705 (LZG50_05705) comL 1165009..1165746 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LZG50_RS05710 (LZG50_05710) rluD 1165881..1166861 (+) 981 WP_096891254.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LZG50_RS05715 (LZG50_05715) yfiH 1166858..1167589 (+) 732 WP_000040119.1 purine nucleoside phosphorylase YfiH -
  LZG50_RS05720 (LZG50_05720) clpC 1167719..1170292 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=555095 LZG50_RS05705 WP_000197686.1 1165009..1165746(-) (comL) [Escherichia coli isolate DCE7]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=555095 LZG50_RS05705 WP_000197686.1 1165009..1165746(-) (comL) [Escherichia coli isolate DCE7]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376