Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SMUNUM_RS02330 Genome accession   NZ_AP014571
Coordinates   448490..449083 (-) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans LP13     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443490..454083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02315 (SMNUM_0412) nadE 443879..444703 (+) 825 WP_002296983.1 ammonia-dependent NAD(+) synthetase -
  SMUNUM_RS02320 (SMNUM_0413) pepC 444816..446150 (+) 1335 WP_286217025.1 aminopeptidase C -
  SMUNUM_RS02325 (SMNUM_0414) pbp1a 446266..448497 (-) 2232 WP_002267942.1 penicillin-binding protein PBP1A -
  SMUNUM_RS02330 (SMNUM_0415) recU 448490..449083 (-) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  SMUNUM_RS02335 (SMNUM_0416) - 449163..449684 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  SMUNUM_RS02340 (SMNUM_0417) gpsB 449790..450128 (+) 339 WP_002263050.1 cell division regulator GpsB -
  SMUNUM_RS02350 (SMNUM_0418) - 450578..451732 (+) 1155 WP_002263884.1 class I SAM-dependent RNA methyltransferase -
  SMUNUM_RS02355 (SMNUM_0419) - 451748..453388 (+) 1641 WP_002263048.1 cell division site-positioning protein MapZ family protein -
  SMUNUM_RS02360 (SMNUM_0420) luxS 453549..454031 (-) 483 WP_002263047.1 S-ribosylhomocysteine lyase Regulator

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=55508 SMUNUM_RS02330 WP_002263052.1 448490..449083(-) (recU) [Streptococcus mutans LP13]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=55508 SMUNUM_RS02330 WP_002263052.1 448490..449083(-) (recU) [Streptococcus mutans LP13]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
TGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATCTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503

Multiple sequence alignment