Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VPBB_RS11865 Genome accession   NC_019955
Coordinates   2618643..2619257 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613643..2624257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS11845 (VPBB_2334) - 2613927..2614844 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  VPBB_RS11850 (VPBB_2335) - 2615097..2616767 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  VPBB_RS11855 (VPBB_2336) can 2617051..2617719 (+) 669 WP_005462578.1 carbonate dehydratase -
  VPBB_RS11860 (VPBB_2337) hpt 2617794..2618324 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  VPBB_RS11865 (VPBB_2338) opaR 2618643..2619257 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  VPBB_RS11870 (VPBB_2339) lpdA 2619385..2620812 (-) 1428 WP_015297247.1 dihydrolipoyl dehydrogenase -
  VPBB_RS11875 (VPBB_2340) aceF 2621081..2622967 (-) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=55490 VPBB_RS11865 WP_005479697.1 2618643..2619257(+) (opaR) [Vibrio parahaemolyticus BB22OP]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=55490 VPBB_RS11865 WP_005479697.1 2618643..2619257(+) (opaR) [Vibrio parahaemolyticus BB22OP]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment