Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VPBB_RS09830 Genome accession   NC_019955
Coordinates   2159771..2161174 (-) Length   467 a.a.
NCBI ID   WP_015297058.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154771..2166174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS09795 (VPBB_1928) moaE 2155341..2155796 (-) 456 WP_015297054.1 molybdopterin synthase catalytic subunit MoaE -
  VPBB_RS09800 (VPBB_1929) moaD 2155798..2156055 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  VPBB_RS09805 (VPBB_1930) moaC 2156052..2156531 (-) 480 WP_005488247.1 cyclic pyranopterin monophosphate synthase MoaC -
  VPBB_RS09810 (VPBB_1932) moaB 2156558..2157070 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  VPBB_RS09815 (VPBB_1933) moaA 2157175..2158164 (-) 990 WP_015297056.1 GTP 3',8-cyclase MoaA -
  VPBB_RS09820 (VPBB_1934) - 2158460..2159353 (+) 894 WP_005494500.1 YvcK family protein -
  VPBB_RS09825 (VPBB_1935) luxU 2159430..2159768 (-) 339 WP_015297057.1 quorum-sensing phosphorelay protein LuxU -
  VPBB_RS09830 (VPBB_1936) luxO 2159771..2161174 (-) 1404 WP_015297058.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VPBB_RS09835 (VPBB_1937) uvrB 2161464..2163494 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  VPBB_RS09845 (VPBB_1939) rsxA 2164485..2165063 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  VPBB_RS09850 (VPBB_1940) rsxB 2165067..2165663 (+) 597 WP_015297060.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52207.68 Da        Isoelectric Point: 6.0784

>NTDB_id=55488 VPBB_RS09830 WP_015297058.1 2159771..2161174(-) (luxO) [Vibrio parahaemolyticus BB22OP]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRISDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGADELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=55488 VPBB_RS09830 WP_015297058.1 2159771..2161174(-) (luxO) [Vibrio parahaemolyticus BB22OP]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTTTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCACCGAA
TTTCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAC
CCAGATGTACCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGATGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGGTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTGCGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.054

95.931

0.835
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment