Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LZ756_RS12365 Genome accession   NZ_CP090547
Coordinates   2580953..2581615 (-) Length   220 a.a.
NCBI ID   WP_020852038.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575953..2586615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS12360 (LZ756_12360) - 2577123..2580521 (+) 3399 WP_020852039.1 Rne/Rng family ribonuclease -
  LZ756_RS12365 (LZ756_12365) letA 2580953..2581615 (-) 663 WP_020852038.1 response regulator Regulator
  LZ756_RS12370 (LZ756_12370) - 2581865..2582638 (-) 774 WP_024748990.1 sulfurtransferase -
  LZ756_RS12375 (LZ756_12375) - 2583640..2584041 (+) 402 WP_024748989.1 response regulator -
  LZ756_RS12380 (LZ756_12380) - 2585086..2585697 (-) 612 WP_020852036.1 superoxide dismutase -
  LZ756_RS12385 (LZ756_12385) - 2585939..2586379 (+) 441 WP_020852035.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23876.96 Da        Isoelectric Point: 7.8705

>NTDB_id=554868 LZ756_RS12365 WP_020852038.1 2580953..2581615(-) (letA) [Xylella fastidiosa subsp. sandyi strain OC8]
MTIKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLRDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKTI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=554868 LZ756_RS12365 WP_020852038.1 2580953..2581615(-) (letA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGACTATTAAGATTTTTCTGATTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGC
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAAGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGTTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTGGCTTTAGGGAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCACCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCGGTTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTTGATGTTCGAGATACCATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAACGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

41.475

98.636

0.409
  letA Legionella pneumophila strain ERS1305867

41.475

98.636

0.409