Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   LZ756_RS09945 Genome accession   NZ_CP090547
Coordinates   2068412..2071309 (+) Length   965 a.a.
NCBI ID   WP_020851525.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063412..2076309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS09920 (LZ756_09920) murJ 2064139..2065749 (-) 1611 WP_042836600.1 murein biosynthesis integral membrane protein MurJ -
  LZ756_RS09925 (LZ756_09925) rpsT 2065849..2066118 (+) 270 WP_010894866.1 30S ribosomal protein S20 -
  LZ756_RS09930 (LZ756_09930) obgE 2066232..2067305 (-) 1074 WP_020851526.1 GTPase ObgE -
  LZ756_RS09935 (LZ756_09935) rpmA 2067474..2067731 (-) 258 WP_004085949.1 50S ribosomal protein L27 -
  LZ756_RS09940 (LZ756_09940) rplU 2067755..2068075 (-) 321 WP_004088409.1 50S ribosomal protein L21 -
  LZ756_RS09945 (LZ756_09945) uvrA 2068412..2071309 (+) 2898 WP_020851525.1 excinuclease ABC subunit UvrA Machinery gene
  LZ756_RS09950 (LZ756_09950) - 2071433..2072368 (-) 936 WP_020851524.1 hypothetical protein -
  LZ756_RS09955 (LZ756_09955) - 2072878..2073294 (-) 417 WP_020851523.1 hypothetical protein -
  LZ756_RS09960 (LZ756_09960) - 2073371..2073934 (-) 564 WP_020851522.1 hypothetical protein -
  LZ756_RS09965 (LZ756_09965) guaA 2073977..2075545 (-) 1569 WP_020851521.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 965 a.a.        Molecular weight: 107043.90 Da        Isoelectric Point: 6.6710

>NTDB_id=554855 LZ756_RS09945 WP_020851525.1 2068412..2071309(+) (uvrA) [Xylella fastidiosa subsp. sandyi strain OC8]
MTALIRIRGARTHNLKNLNLDLPRNTLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDVDQIEGL
SPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDHHYPLEAQTVSQMVDHVLTLDPEQRYMLLAPMVRERK
GEHTQVFEQLRAQGFVRVRVDGELYEIDAVPTLTLRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGNGMASVQTLDT
TTTTPHLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPACNGLGVTEFFDPAKVVIHPDLSLSAGAVRGWDRRNAYYFQ
LIASLAKHYTFDIDASWESLPEEIRHTILFGSGDEQINFTYLTEAGGRTKRKHRFEGIVPNLERRYRETESAAVREELAK
YVSTRTCPECGGTRLNRAARNVFVADRTLPELTVLPINDALEFFKTLRLPGWRGEIAIKIVKEIGERLGFLVDVGLDYLT
LERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRQADHILD
IGPGAGVHGGEICAQGSLEQIMAAPRSLTGQYLSGRRRIEIPKQRHPPNATKMLHLRGACGNNLKGVNLDIPEGLFTCIT
GVSGSGKSTLINDTLFTLAANEINGASHPIAPYASVDGLELFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE
ARARGYSPGRFSFNVRGGRCEACEGDGLIKVEMHFLPDVYVPCDICHGKRYNRETLEIRYKGYNINDVLEMTVEDALKLF
EAVPAIARKLETLVDVGLSYLKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFYDIEALLAVLHKLRD
AGNTVIVIEHNLDVIKTADWVIDLGPEGGGRGGEILVAGTPEAVAAHPHSHTGHFLAKLLPPKDVSNCDHRNPREEVDIA
QTVHR

Nucleotide


Download         Length: 2898 bp        

>NTDB_id=554855 LZ756_RS09945 WP_020851525.1 2068412..2071309(+) (uvrA) [Xylella fastidiosa subsp. sandyi strain OC8]
GTGACGGCCCTCATCCGTATCCGCGGCGCGCGGACACACAACCTTAAGAATCTGAATCTTGACCTACCACGTAACACACT
GATCGTCATCACCGGCCTCTCCGGCTCTGGCAAATCATCGTTGGCATTTGACACGATCTACGCTGAAGGTCAGCGGCGCT
ATGTCGAATCACTGTCGGCCTACGCGCGGCAGTTTTTGAGCGTGATGGAAAAGCCGGATGTGGACCAGATTGAAGGGCTG
TCTCCGGCTATTTCAATTGAACAAAAGTCAACCTCGCATAATCCCCGCTCCACCGTCGGTACGATCACCGAGATCTACGA
TTATTTGCGTCTGCTGTATGCACGTGTCGGACAACCGCGCTGCCCGGACCATCATTACCCGCTGGAAGCACAAACAGTGA
GCCAGATGGTGGATCACGTATTGACCTTGGATCCAGAGCAGCGCTACATGCTGTTGGCACCTATGGTACGTGAGCGCAAG
GGTGAACATACCCAAGTGTTCGAACAACTGCGTGCACAAGGCTTTGTGCGCGTGCGCGTGGATGGCGAACTGTATGAGAT
CGACGCGGTGCCAACACTGACACTGCGTCAGAAGCATACGATTGAAGCGGTCATTGACCGTTTTCGCCCACGTGAAGACA
TCAAGCAACGTTTGGCGGAAAGCTTTGAAACTGCATTGAAGTTGGGCAACGGGATGGCTTCAGTCCAAACCCTGGACACA
ACAACAACCACACCACACCTGTTTTCCTCTAAGTACTCCTGTCCAGTATGCGATTATTCGCTACCGGAATTAGAGCCACG
GTTGTTCTCCTTCAACGCCCCGATGGGGGCGTGCCCCGCGTGCAACGGACTGGGAGTCACCGAGTTTTTCGACCCGGCCA
AGGTCGTCATACATCCAGATCTTTCACTGTCAGCTGGTGCTGTGCGTGGTTGGGACCGCCGCAACGCTTACTATTTTCAA
TTGATCGCTTCGCTCGCCAAGCACTATACGTTCGACATTGACGCATCATGGGAATCGCTCCCTGAAGAGATCCGTCATAC
CATCCTGTTCGGCAGTGGCGATGAGCAGATCAACTTCACCTATTTGACGGAGGCTGGAGGGCGTACCAAGCGCAAACATC
GCTTTGAAGGCATTGTGCCGAACCTAGAGCGCCGCTACCGTGAGACAGAATCCGCTGCCGTACGTGAGGAACTGGCCAAG
TACGTCAGTACGCGGACCTGCCCGGAGTGCGGCGGCACACGTCTGAACCGCGCCGCACGCAATGTATTTGTTGCCGATCG
GACGCTCCCTGAGCTGACAGTGCTGCCAATTAATGACGCATTGGAATTCTTCAAAACGCTACGCCTGCCAGGCTGGCGTG
GTGAGATCGCAATTAAAATTGTCAAAGAAATCGGGGAGCGTCTCGGCTTCCTGGTCGATGTTGGTCTGGACTACCTAACA
TTGGAGCGTAAGGCCGACACCCTCTCTGGTGGTGAAGCACAACGTATCCGCCTAGCGAGTCAGATCGGTGCTGGTCTAGT
GGGAGTGATGTATGTGCTGGACGAACCCTCCATCGGATTGCACCAGCGTGATAACGAACGCCTGCTCGGTACACTAACTC
GGTTGCGCGACCTTGGTAATACGGTGATTGTCGTTGAACACGACGAGGACGCCATCCGCCAAGCCGACCATATTCTCGAC
ATTGGTCCCGGTGCCGGTGTGCATGGTGGTGAGATCTGTGCTCAGGGGTCGTTAGAACAGATTATGGCCGCGCCGCGCTC
CTTGACTGGCCAATACTTATCCGGTCGACGCCGGATTGAAATCCCCAAACAGCGCCACCCCCCCAACGCCACGAAGATGC
TGCACCTGCGCGGCGCCTGCGGTAATAACCTTAAAGGCGTTAATCTTGACATCCCTGAGGGTCTGTTTACTTGCATTACT
GGGGTGTCCGGCTCCGGTAAATCGACGCTCATCAACGACACGTTGTTTACGTTAGCCGCAAACGAGATCAATGGTGCTTC
TCATCCCATTGCGCCGTATGCGTCAGTCGATGGTCTAGAGCTGTTCGACAAAGTGGTAGACATTGATCAATCACCGATCG
GACGCACGCCACGCTCCAACCCAGCAACCTACACTGGCATGTTCACCCCGTTACGCGAGCTTTTTGCGCAGGTTCCGGAG
GCGCGCGCGCGCGGTTATTCTCCAGGACGTTTCAGCTTCAACGTGCGCGGCGGGCGCTGTGAAGCGTGTGAGGGCGACGG
GCTGATTAAGGTTGAAATGCACTTTTTACCCGACGTCTACGTACCATGCGATATATGTCATGGCAAACGTTACAACCGTG
AGACGCTGGAAATACGATACAAGGGATATAACATCAACGACGTGCTGGAGATGACCGTTGAAGATGCCTTAAAACTGTTT
GAAGCAGTACCAGCAATTGCACGCAAGCTGGAAACTTTGGTAGATGTAGGCTTGAGCTACCTCAAACTCGGCCAGAGTGC
GACGACGCTATCAGGCGGTGAGGCGCAGCGTGTCAAATTGTCTAAAGAACTGTCACGACGCGACACCGGACGCACGCTGT
ATATCCTTGACGAACCAACCACTGGGCTGCATTTTTACGACATTGAAGCGCTGCTGGCAGTACTGCACAAACTGCGCGAT
GCAGGGAATACGGTCATCGTGATTGAGCATAATTTAGATGTGATCAAAACGGCGGATTGGGTCATTGATCTCGGCCCAGA
GGGAGGCGGACGCGGTGGTGAAATCCTGGTGGCCGGCACTCCTGAAGCGGTGGCTGCGCATCCTCACTCGCATACTGGCC
ACTTCTTAGCCAAGCTGTTACCTCCTAAGGATGTATCCAACTGCGATCATCGGAACCCTAGAGAAGAGGTTGACATTGCA
CAAACGGTACACCGTTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-400)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.851

97.409

0.544
  uvrA Streptococcus pneumoniae TIGR4

55.851

97.409

0.544
  uvrA Streptococcus pneumoniae D39

55.851

97.409

0.544