Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LZ756_RS01825 Genome accession   NZ_CP090547
Coordinates   447718..448380 (+) Length   220 a.a.
NCBI ID   WP_020851885.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442718..453380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS01810 (LZ756_01810) - 442953..444194 (+) 1242 WP_020851882.1 lipoprotein-releasing ABC transporter permease subunit -
  LZ756_RS01815 (LZ756_01815) lolD 444187..444909 (+) 723 WP_020851883.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LZ756_RS01820 (LZ756_01820) comA 445256..447733 (+) 2478 WP_020851884.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LZ756_RS01825 (LZ756_01825) exbB 447718..448380 (+) 663 WP_020851885.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LZ756_RS01830 (LZ756_01830) - 448385..448822 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  LZ756_RS01835 (LZ756_01835) msbA 448840..450588 (+) 1749 WP_020851886.1 lipid A export permease/ATP-binding protein MsbA -
  LZ756_RS01840 (LZ756_01840) lpxK 450585..451604 (+) 1020 WP_020851887.1 tetraacyldisaccharide 4'-kinase -
  LZ756_RS01845 (LZ756_01845) - 452013..453095 (-) 1083 WP_020850949.1 phage late control D family protein -
  LZ756_RS01850 (LZ756_01850) - 453086..453304 (-) 219 WP_020850950.1 tail protein X -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23970.38 Da        Isoelectric Point: 8.9727

>NTDB_id=554814 LZ756_RS01825 WP_020851885.1 447718..448380(+) (exbB) [Xylella fastidiosa subsp. sandyi strain OC8]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRIAGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=554814 LZ756_RS01825 WP_020851885.1 447718..448380(+) (exbB) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGTCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCCCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTGCTGGCTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441