Detailed information NTG0554813

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LZ756_RS01820
• Genome accession: NZ_CP090547
• Coordinates: 445256..447733 (+)
• Length: 825 a.a.
• NCBI ID: WP_020851884.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi strain OC8
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 440256..452733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ756_RS01795 (LZ756_01795)	-	441370..442155 (+)	786	WP_020851881.1	succinate dehydrogenase iron-sulfur subunit	-
LZ756_RS01800 (LZ756_01800)	-	442276..442524 (+)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
LZ756_RS01805 (LZ756_01805)	-	442556..442927 (+)	372	WP_225621722.1	hypothetical protein	-
LZ756_RS01810 (LZ756_01810)	-	442953..444194 (+)	1242	WP_020851882.1	lipoprotein-releasing ABC transporter permease subunit	-
LZ756_RS01815 (LZ756_01815)	lolD	444187..444909 (+)	723	WP_020851883.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
LZ756_RS01820 (LZ756_01820)	comA	445256..447733 (+)	2478	WP_020851884.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LZ756_RS01825 (LZ756_01825)	exbB	447718..448380 (+)	663	WP_020851885.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LZ756_RS01830 (LZ756_01830)	-	448385..448822 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
LZ756_RS01835 (LZ756_01835)	msbA	448840..450588 (+)	1749	WP_020851886.1	lipid A export permease/ATP-binding protein MsbA	-
LZ756_RS01840 (LZ756_01840)	lpxK	450585..451604 (+)	1020	WP_020851887.1	tetraacyldisaccharide 4'-kinase	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90732.76 Da
• Isoelectric Point: 9.4516

>NTDB_id=554813 LZ756_RS01820 WP_020851884.1 445256..447733(+) (comA) [Xylella fastidiosa subsp. sandyi strain OC8]
MDDMKPEQRHMLQRCWVDVLSVIRHAACLRYLALPALLPSAVALLLGCLAAITLPRLPPVWVLWIFLFAGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVAPGPRSALHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRTPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLVLLGTALEALVPGWGSPMWRLGGNCFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=554813 LZ756_RS01820 WP_020851884.1 445256..447733(+) (comA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGGACGATATGAAACCTGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAGC
GTGCCTGCGTTACCTCGCGTTACCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGTTGGGTTGTCTTGCTGCAATCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGCCGGAGTAATGCTCGCTGTTGTCGTACGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGCACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
CGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCATCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCTTGGCGTTGGCCGCGGCCACTCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGTGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTGTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGCCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGCGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Domain of unknown function (DUF4131) (DUF4131) (58-215)

• Competence protein (Competence) (253-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.711	100	0.379