Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J7655_RS13910 Genome accession   NZ_CP072610
Coordinates   3019406..3020038 (-) Length   210 a.a.
NCBI ID   WP_037000321.1    Uniprot ID   A0A1I5QVQ7
Organism   Pseudomonas wenzhouensis strain A20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3014406..3025038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7655_RS13880 (J7655_13835) murB 3015526..3016545 (-) 1020 WP_230924947.1 UDP-N-acetylmuramate dehydrogenase -
  J7655_RS13885 (J7655_13840) - 3016542..3017006 (-) 465 WP_230924948.1 low molecular weight protein-tyrosine-phosphatase -
  J7655_RS13890 (J7655_13845) kdsB 3017006..3017770 (-) 765 WP_230924949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J7655_RS13895 (J7655_13850) - 3017771..3017956 (-) 186 WP_003245207.1 Trm112 family protein -
  J7655_RS13900 (J7655_13855) lpxK 3017979..3018980 (-) 1002 WP_230924950.1 tetraacyldisaccharide 4'-kinase -
  J7655_RS13905 (J7655_13860) - 3018981..3019409 (-) 429 WP_230924951.1 ExbD/TolR family protein -
  J7655_RS13910 (J7655_13865) exbB 3019406..3020038 (-) 633 WP_037000321.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J7655_RS13915 (J7655_13870) comA 3020095..3022308 (-) 2214 WP_230927728.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J7655_RS13920 (J7655_13875) - 3022447..3022971 (+) 525 WP_230924952.1 DUF2062 domain-containing protein -
  J7655_RS13925 (J7655_13880) - 3023129..3024373 (-) 1245 WP_230924953.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22877.15 Da        Isoelectric Point: 8.5156

>NTDB_id=554569 J7655_RS13910 WP_037000321.1 3019406..3020038(-) (exbB) [Pseudomonas wenzhouensis strain A20]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=554569 J7655_RS13910 WP_037000321.1 3019406..3020038(-) (exbB) [Pseudomonas wenzhouensis strain A20]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACCCTGCGGCCTGCCCGGGTCACTCCGGCCAATCTGCTGGCCCAGGTATGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATACTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCATGATCTGGAACGCTACCT
CAATGCGCTTGGCACCATTGCCGGTATCGCCCCGTTACTCGGCCTGCTTGGCACCGTGCTGGGCATGATCGAAATCTTCA
GCTCCTTCATGGGCTCTGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACAGCAGCC
GGCCTGATGGTGGCGATCCCTGCGCTGTTTTTCCACCGCTACCTGCAGCGACGCGTCGACGAGTTGGTGGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAGATGGTGCAGGGTGATCGCGATGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5QVQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895