Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   METFOR_RS05325 Genome accession   NC_019943
Coordinates   1045596..1047905 (+) Length   769 a.a.
NCBI ID   WP_015285083.1    Uniprot ID   -
Organism   Methanoregula formicica SMSP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1040596..1052905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METFOR_RS05295 (Metfor_1064) - 1041394..1042194 (+) 801 WP_015285077.1 response regulator -
  METFOR_RS05300 (Metfor_1065) minD 1042231..1043028 (-) 798 WP_015285078.1 cell division ATPase MinD -
  METFOR_RS05305 (Metfor_1066) - 1043099..1043614 (-) 516 WP_015285079.1 hypothetical protein -
  METFOR_RS05310 (Metfor_1067) - 1043698..1044384 (-) 687 WP_015285080.1 hypothetical protein -
  METFOR_RS05315 (Metfor_1068) - 1044647..1044994 (+) 348 WP_015285081.1 roadblock/LC7 domain-containing protein -
  METFOR_RS05320 (Metfor_1069) - 1045045..1045446 (+) 402 WP_158491354.1 roadblock/LC7 domain-containing protein -
  METFOR_RS05325 (Metfor_1070) epdL 1045596..1047905 (+) 2310 WP_015285083.1 type II/IV secretion system ATPase subunit Machinery gene
  METFOR_RS05330 epdJ 1047898..1048821 (+) 924 WP_048110829.1 type II secretion system F family protein Machinery gene
  METFOR_RS05335 epdK 1048824..1049858 (+) 1035 WP_052310763.1 type II secretion system F family protein Machinery gene
  METFOR_RS05340 (Metfor_1072) yciH 1049940..1050245 (-) 306 WP_015285084.1 stress response translation initiation inhibitor YciH -
  METFOR_RS05345 (Metfor_1073) - 1050437..1051897 (+) 1461 WP_048110830.1 cobyric acid synthase -
  METFOR_RS05350 (Metfor_1074) - 1051890..1052156 (-) 267 WP_015285086.1 hypothetical protein -

Sequence

Protein


Download         Length: 769 a.a.        Molecular weight: 85899.27 Da        Isoelectric Point: 4.7653

>NTDB_id=55447 METFOR_RS05325 WP_015285083.1 1045596..1047905(+) (epdL) [Methanoregula formicica SMSP]
MADKDGEPLDDVEGLLTRIGTMKKEAPPAGGKEGEATKSPAGTPAEPPATSGGDFSLLMKKLGMGETREKDPGPASSPSP
APPAEPQEDQQAPAIVTLDDLLEAEEPPATAAEEVTSAAETAVEIIDEDPRGSLWKKKPKPTVTADPAPQPPKEAGTDAE
EKIISVDQITDLSGLILPKSATFEVEELKLHSRVSAYDGQSIGSLPDEFDEIWKKELFKAGFKDLDLGDVVAAGETKAPP
AAKKFSIAGLFAAIRTEEEEYDAKKHGPLVDLFFTPRPGIEEIELYPVNEPYAYVRIIYDHATHEYTYNVIEPVLAEQEN
DLLKEVKERLFETLDINTKDITRDEARLKLREATNDVLQDYGIRLTPVQKEKLHYNMHKDFLGDGLIDPVMHDKYIEDIS
CDGVHTPIFAFHSSYESMKTTLAYHTAEDLDSFVTKLAQRAGKYISIAEPILDATMQDGSRIQMTLGTEVTAHGSTFTIR
KFKDEPITPTDLIEWHTFAPLSIAYIWLAVENGKSAIFAGGTASGKTTALNAISLFIPPMAKIVSLEDTREVKLPHPNWI
PSVTRDSFDTAGRGEINMYELLRAAMRQRPEYIIVGEVRGKECQTLFQAMSTGHVTYSTTHADSVASVVHRIENPPMDVP
RNMLSALDFICVQVQARVGGKRIRRNKQIVEILDIDPRTNELITNEVFKWRSATDEHTYSGKSYLLEEIMEAKGWDEGRM
REELKRRQEVLEWMRIKKIRHYRDVAKTLISYHRDPETVIEKVRKDLYE

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=55447 METFOR_RS05325 WP_015285083.1 1045596..1047905(+) (epdL) [Methanoregula formicica SMSP]
ATGGCTGACAAAGATGGCGAACCTCTTGATGATGTCGAGGGGCTGCTCACCAGGATCGGGACCATGAAAAAGGAGGCCCC
TCCTGCGGGAGGGAAGGAAGGCGAGGCAACGAAAAGTCCGGCCGGCACACCTGCCGAACCACCCGCCACCTCCGGTGGCG
ATTTCTCCCTCCTCATGAAGAAGCTGGGAATGGGGGAGACGCGCGAGAAGGATCCCGGCCCGGCATCCTCACCATCCCCG
GCCCCCCCGGCAGAACCGCAGGAGGACCAGCAGGCACCCGCGATAGTAACCCTTGACGACCTGCTGGAAGCAGAGGAGCC
GCCCGCCACCGCCGCTGAAGAAGTCACTTCCGCCGCAGAAACGGCAGTCGAGATTATCGACGAGGATCCGCGGGGATCAC
TTTGGAAGAAGAAGCCAAAGCCCACGGTTACCGCAGATCCTGCCCCGCAGCCCCCAAAAGAGGCGGGAACAGATGCCGAA
GAGAAGATCATCTCCGTGGACCAGATCACCGACCTCTCCGGCCTGATCCTCCCGAAGAGCGCAACATTCGAGGTCGAAGA
GCTCAAGCTCCACAGCCGCGTCAGCGCCTATGATGGGCAGTCGATCGGCAGCCTTCCGGATGAATTTGACGAGATCTGGA
AGAAGGAACTCTTCAAGGCCGGGTTCAAGGACCTGGATCTCGGGGATGTTGTTGCTGCCGGAGAGACAAAGGCCCCGCCG
GCAGCAAAGAAGTTCAGCATCGCGGGTCTCTTTGCCGCTATCCGTACCGAGGAGGAAGAGTACGATGCCAAAAAACACGG
CCCGCTCGTGGATCTCTTCTTCACGCCCCGCCCCGGTATCGAGGAGATCGAGCTCTACCCGGTCAACGAACCGTATGCGT
ACGTCCGGATCATCTACGACCATGCTACCCACGAATATACCTATAACGTCATTGAGCCTGTATTAGCAGAACAGGAGAAT
GATCTCTTAAAGGAAGTCAAGGAACGCCTGTTTGAGACCCTTGACATCAACACCAAGGACATCACCCGCGACGAGGCCCG
CTTGAAACTTCGGGAGGCGACAAACGATGTCCTCCAGGACTACGGCATACGGCTCACCCCCGTGCAGAAAGAGAAGCTGC
ACTACAACATGCACAAGGATTTCCTCGGCGACGGCCTCATCGACCCGGTCATGCACGACAAGTACATCGAGGATATCTCG
TGCGACGGTGTGCACACCCCGATCTTCGCGTTCCATTCCAGCTACGAATCGATGAAGACCACGCTGGCCTACCACACTGC
CGAGGACCTGGACTCGTTCGTCACAAAACTTGCACAGCGTGCCGGGAAGTACATCTCCATAGCAGAACCGATCCTCGACG
CCACCATGCAGGACGGTTCCCGTATCCAGATGACCCTCGGGACGGAAGTGACTGCCCACGGTTCCACGTTCACCATCCGT
AAGTTCAAGGACGAACCGATCACGCCGACAGACCTGATCGAGTGGCACACCTTTGCCCCGCTCTCGATTGCGTACATCTG
GCTTGCCGTGGAGAACGGGAAGTCGGCCATCTTTGCCGGAGGGACAGCATCCGGGAAGACCACGGCCCTGAACGCCATCT
CGCTCTTCATCCCCCCCATGGCCAAGATCGTCTCGCTCGAGGATACCCGCGAAGTGAAACTCCCGCACCCGAACTGGATC
CCGAGCGTGACCCGCGACTCCTTCGACACGGCAGGACGGGGGGAGATCAACATGTACGAGCTCCTCCGTGCGGCCATGCG
GCAGCGGCCCGAGTACATCATCGTGGGAGAAGTCCGTGGCAAGGAATGCCAGACTCTCTTCCAGGCCATGAGCACGGGCC
ATGTCACCTACTCCACCACCCACGCGGACTCGGTGGCGAGCGTTGTGCACCGTATCGAGAACCCGCCCATGGACGTGCCG
CGGAACATGCTCTCGGCACTGGACTTTATCTGCGTGCAGGTCCAGGCCCGGGTCGGCGGCAAACGTATCCGGCGGAACAA
GCAGATCGTTGAGATTCTCGACATCGACCCGCGGACAAACGAGCTGATCACAAACGAGGTCTTCAAGTGGCGGTCGGCGA
CAGACGAGCATACCTACTCCGGCAAGTCCTACCTGCTTGAAGAGATCATGGAGGCGAAGGGCTGGGATGAGGGGAGGATG
CGGGAAGAGCTCAAGCGGAGGCAGGAAGTTCTCGAATGGATGCGCATCAAGAAGATCCGCCACTATAGGGATGTGGCAAA
GACCCTCATCTCTTACCACCGCGACCCGGAGACCGTTATTGAGAAAGTGAGGAAGGACCTCTATGAATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(425-646)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

68.842

79.714

0.549

Multiple sequence alignment