Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   METFOR_RS05330 Genome accession   NC_019943
Coordinates   1047898..1048821 (+) Length   307 a.a.
NCBI ID   WP_048110829.1    Uniprot ID   -
Organism   Methanoregula formicica SMSP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042898..1053821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METFOR_RS05305 (Metfor_1066) - 1043099..1043614 (-) 516 WP_015285079.1 hypothetical protein -
  METFOR_RS05310 (Metfor_1067) - 1043698..1044384 (-) 687 WP_015285080.1 hypothetical protein -
  METFOR_RS05315 (Metfor_1068) - 1044647..1044994 (+) 348 WP_015285081.1 roadblock/LC7 domain-containing protein -
  METFOR_RS05320 (Metfor_1069) - 1045045..1045446 (+) 402 WP_158491354.1 roadblock/LC7 domain-containing protein -
  METFOR_RS05325 (Metfor_1070) epdL 1045596..1047905 (+) 2310 WP_015285083.1 type II/IV secretion system ATPase subunit Machinery gene
  METFOR_RS05330 epdJ 1047898..1048821 (+) 924 WP_048110829.1 type II secretion system F family protein Machinery gene
  METFOR_RS05335 epdK 1048824..1049858 (+) 1035 WP_052310763.1 type II secretion system F family protein Machinery gene
  METFOR_RS05340 (Metfor_1072) yciH 1049940..1050245 (-) 306 WP_015285084.1 stress response translation initiation inhibitor YciH -
  METFOR_RS05345 (Metfor_1073) - 1050437..1051897 (+) 1461 WP_048110830.1 cobyric acid synthase -
  METFOR_RS05350 (Metfor_1074) - 1051890..1052156 (-) 267 WP_015285086.1 hypothetical protein -
  METFOR_RS05355 (Metfor_1075) - 1052282..1053445 (+) 1164 WP_015285087.1 sugar phosphate nucleotidyltransferase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33962.86 Da        Isoelectric Point: 9.0881

>NTDB_id=55448 METFOR_RS05330 WP_048110829.1 1047898..1048821(+) (epdJ) [Methanoregula formicica SMSP]
MNSYERFCFNLIGNRMKAKRNDYAQLKNDLISARFKTPFEVYLSTAVISAILVGFCMAAVIGLITWLLRLPNLIQYKGAV
PGFVLVLSQHSLVIGTIVITIFSLLVFGGLTFAAFLMYPGIEAGNRQRKIDASLPYAINYVTSMSTAGITPAEVFRLLGD
SPIYGESSVEARYVAREIDIFGRDLIDALRLVSASTPSKRMKEFLQGAMASISSGGNLTDYFRTKADQYALENRQTQKQF
LDFLALIAESYVTAMVAGTLFLIILQSIMSVLSGDNRPMFLYAIVYIMIPFGSLAFVVMISTMTPET

Nucleotide


Download         Length: 924 bp        

>NTDB_id=55448 METFOR_RS05330 WP_048110829.1 1047898..1048821(+) (epdJ) [Methanoregula formicica SMSP]
ATGAATAGTTACGAGCGGTTCTGCTTCAACCTCATCGGCAACCGGATGAAGGCCAAGCGGAACGACTATGCCCAGCTGAA
AAACGACCTGATCTCGGCCCGGTTCAAGACACCGTTCGAGGTCTATCTCTCCACCGCTGTTATCAGTGCCATTCTCGTCG
GGTTCTGCATGGCGGCCGTCATCGGCCTCATCACCTGGCTCCTGCGGCTTCCGAACCTGATCCAGTACAAGGGCGCAGTC
CCGGGTTTTGTCCTCGTCCTCTCGCAACACAGCCTTGTCATCGGGACCATTGTCATCACCATCTTCTCGCTTCTGGTCTT
TGGCGGCCTCACGTTTGCGGCATTCCTGATGTACCCCGGCATCGAAGCGGGCAACCGGCAGCGCAAGATCGATGCGAGCC
TCCCGTACGCGATCAACTACGTGACGTCAATGTCGACAGCAGGCATCACCCCGGCCGAAGTCTTCCGGCTGCTCGGGGAC
AGCCCCATCTATGGCGAGAGTTCGGTCGAAGCCCGGTATGTTGCCCGGGAGATCGATATCTTCGGGAGAGACTTAATCGA
TGCCCTGCGCCTCGTATCGGCAAGCACGCCCAGCAAGCGCATGAAGGAGTTCCTGCAGGGCGCGATGGCGAGCATATCGA
GCGGGGGGAACCTGACAGATTATTTCCGGACCAAGGCGGACCAGTACGCCCTTGAGAACCGGCAGACCCAGAAGCAGTTC
CTCGATTTCCTGGCATTGATCGCCGAGTCGTACGTCACCGCAATGGTTGCAGGGACACTCTTTTTGATCATCCTCCAGTC
CATTATGTCCGTACTATCGGGTGACAACAGGCCGATGTTCCTCTATGCCATTGTCTATATCATGATACCGTTTGGCAGCC
TGGCATTTGTCGTCATGATCAGCACAATGACACCGGAGACCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

66.34

99.674

0.661

Multiple sequence alignment