Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LZ755_RS11370 Genome accession   NZ_CP090504
Coordinates   2444259..2444921 (-) Length   220 a.a.
NCBI ID   WP_038228566.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv25     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439259..2449921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ755_RS11365 (LZ755_11365) - 2440415..2443813 (+) 3399 WP_038228569.1 Rne/Rng family ribonuclease -
  LZ755_RS11370 (LZ755_11370) letA 2444259..2444921 (-) 663 WP_038228566.1 response regulator Regulator
  LZ755_RS11375 (LZ755_11375) - 2445171..2445944 (-) 774 WP_038228739.1 sulfurtransferase -
  LZ755_RS11380 (LZ755_11380) - 2446946..2447344 (+) 399 WP_011098322.1 response regulator -
  LZ755_RS11385 (LZ755_11385) - 2448388..2448999 (-) 612 WP_020852036.1 superoxide dismutase -
  LZ755_RS11390 (LZ755_11390) - 2449241..2449681 (+) 441 WP_020852035.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23766.86 Da        Isoelectric Point: 6.7142

>NTDB_id=554393 LZ755_RS11370 WP_038228566.1 2444259..2444921(-) (letA) [Xylella fastidiosa subsp. morus strain Riv25]
MTIKIFLVDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKLLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKTI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=554393 LZ755_RS11370 WP_038228566.1 2444259..2444921(-) (letA) [Xylella fastidiosa subsp. morus strain Riv25]
ATGACTATTAAGATTTTTCTGGTTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGT
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAAGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGTTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTGGCTTTAGGGAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCACCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCTGTTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTTGATGTTCGAGATACCATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAACGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

41.475

98.636

0.409
  letA Legionella pneumophila strain ERS1305867

41.475

98.636

0.409