Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J6600_RS14730 Genome accession   NZ_CP072563
Coordinates   3027077..3027721 (-) Length   214 a.a.
NCBI ID   WP_209387546.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022077..3032721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS14695 (J6600_14695) - 3023262..3023693 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  J6600_RS14700 (J6600_14700) - 3023693..3024034 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  J6600_RS14705 (J6600_14705) - 3024027..3025508 (+) 1482 WP_032863920.1 Na+/H+ antiporter subunit D -
  J6600_RS14710 (J6600_14710) - 3025514..3025990 (+) 477 WP_209387545.1 Na+/H+ antiporter subunit E -
  J6600_RS14715 (J6600_14715) - 3025990..3026274 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  J6600_RS14720 (J6600_14720) mnhG 3026258..3026632 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  J6600_RS14725 (J6600_14725) - 3026672..3027055 (-) 384 WP_065180456.1 hotdog fold thioesterase -
  J6600_RS14730 (J6600_14730) comA 3027077..3027721 (-) 645 WP_209387546.1 response regulator transcription factor Regulator
  J6600_RS14735 (J6600_14735) comP 3027802..3030153 (-) 2352 WP_271259836.1 histidine kinase Regulator
  J6600_RS14740 (J6600_14740) comX 3030131..3030301 (-) 171 WP_032863917.1 competence pheromone ComX -
  J6600_RS14745 (J6600_14745) - 3030301..3031227 (-) 927 WP_014721741.1 polyprenyl synthetase family protein -
  J6600_RS14750 (J6600_14750) degQ 3031358..3031498 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  J6600_RS14755 (J6600_14755) - 3031963..3032304 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24259.67 Da        Isoelectric Point: 4.8671

>NTDB_id=554254 J6600_RS14730 WP_209387546.1 3027077..3027721(-) (comA) [Bacillus sp. LJBV19]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKLSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=554254 J6600_RS14730 WP_209387546.1 3027077..3027721(-) (comA) [Bacillus sp. LJBV19]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCTGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855