Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   J5X93_RS18665 Genome accession   NZ_CP072559
Coordinates   4015204..4017423 (-) Length   739 a.a.
NCBI ID   WP_250033815.1    Uniprot ID   -
Organism   Pseudomonas sp. BYT-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4010204..4022423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X93_RS18630 (J5X93_18550) murB 4010552..4011568 (-) 1017 WP_250033811.1 UDP-N-acetylmuramate dehydrogenase -
  J5X93_RS18635 (J5X93_18555) - 4011565..4012029 (-) 465 WP_043214393.1 low molecular weight protein-tyrosine-phosphatase -
  J5X93_RS18640 (J5X93_18560) kdsB 4012029..4012793 (-) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J5X93_RS18645 (J5X93_18565) - 4012790..4012975 (-) 186 WP_003247142.1 Trm112 family protein -
  J5X93_RS18650 (J5X93_18570) lpxK 4013017..4014027 (-) 1011 WP_250033813.1 tetraacyldisaccharide 4'-kinase -
  J5X93_RS18655 (J5X93_18575) - 4014027..4014461 (-) 435 WP_043214387.1 biopolymer transporter ExbD -
  J5X93_RS18660 (J5X93_18580) exbB 4014458..4015093 (-) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J5X93_RS18665 (J5X93_18585) comA 4015204..4017423 (-) 2220 WP_250033815.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J5X93_RS18670 (J5X93_18590) - 4017566..4018207 (+) 642 WP_139205743.1 DUF2062 domain-containing protein -
  J5X93_RS18675 (J5X93_18595) - 4018091..4018870 (-) 780 WP_043214381.1 ABC transporter permease -
  J5X93_RS18680 (J5X93_18600) - 4018867..4019799 (-) 933 WP_070573244.1 ABC transporter ATP-binding protein -
  J5X93_RS18685 (J5X93_18605) - 4019940..4020563 (-) 624 WP_043214375.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79777.63 Da        Isoelectric Point: 10.4759

>NTDB_id=554188 J5X93_RS18665 WP_250033815.1 4015204..4017423(-) (comA) [Pseudomonas sp. BYT-1]
MRTGMFALALGLLSLRILPALPSVGATLTMLLLGVVCLPGRARAVGCFLLGMSWACWSAQNALDDRLESALDGRTLWLEG
RVVGLPALRGQSVRFELADPTSRRTALPRRLQLNWFEGPQLSAGEYWRLAVTLKRPHGLLNPHGPDWEALFLARRIGAVG
TVKAGQLLAPATNNWRDAVRQRLLAVDAQGREGALAALVLGDGSGLARSEWQALQATGTVHLMVISGQHIGLVAGLVYGL
VAWLARLGLWPQRLPWLPWACALSLVSALGYGGLAGFGVPVQRACLMLAMVLLWRLHFSHLGALLPLLAALCGVLLIEPL
ASLLPGFWLSFAAVAVLVFCFAGRLGGWRPWQAWSRAQWVVAVGLLPALLALGLPISLTAPLANLLAVPWISFAVLPLAL
LGSALLPLGQPGELLLWWAGGLLEILFQQLALLGQWRPAWEPQALTPWAGLLVGLGAALLLLPRGVPLRGLGGVMLMALW
APREPVPQGQVEILQLDVGQGLAVLLRTRTHSLLYDAGPAKGDMDLGDRVVLPTLRKLGVKHLDLMLISHGHADHAGGAA
AIGRGLPLGRVLAGEPEQLPEALRARRCVSGERWHWDGVDFMLWQWAGGPAGNERSCALLVQAQGERLLLAGDMEAGAER
AWLAATDAPRIDWLQAPHHGSRSSSTEPFIRATSPRGVMISRGHYNSFGHPHPQVVERYRRYGLSVHDTAIEGALRLRLG
THGEVEGLRAQRRFWRQGQ

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=554188 J5X93_RS18665 WP_250033815.1 4015204..4017423(-) (comA) [Pseudomonas sp. BYT-1]
ATGCGCACAGGGATGTTCGCGCTCGCACTCGGGCTGTTGAGCCTGCGTATTCTGCCTGCATTGCCATCGGTCGGCGCGAC
GCTGACGATGCTGTTGCTCGGCGTGGTTTGTCTTCCTGGCAGAGCCAGGGCTGTAGGTTGCTTTCTCCTCGGAATGAGCT
GGGCCTGTTGGTCGGCGCAAAACGCCTTGGATGATCGTCTGGAATCCGCGTTGGATGGGCGAACCCTGTGGCTGGAGGGG
CGGGTGGTGGGATTGCCCGCACTACGAGGGCAATCCGTGCGCTTCGAGCTTGCGGACCCTACCTCGCGTCGCACCGCCTT
GCCGCGTCGGCTTCAGTTGAACTGGTTCGAGGGGCCACAACTGAGCGCCGGCGAGTACTGGCGCCTGGCTGTCACGCTCA
AGCGACCCCATGGCCTGCTCAACCCCCATGGTCCCGACTGGGAGGCGCTTTTTCTCGCGCGGCGGATCGGCGCCGTGGGC
ACCGTCAAGGCTGGGCAGTTATTGGCACCCGCCACGAACAACTGGCGCGACGCGGTGCGCCAACGCTTGCTGGCAGTCGA
TGCCCAGGGGCGCGAAGGTGCCCTGGCGGCGCTGGTCCTGGGGGATGGCTCGGGGCTTGCACGCTCGGAATGGCAGGCGT
TGCAGGCCACCGGTACGGTGCACTTGATGGTGATTTCCGGCCAGCACATCGGCTTGGTGGCCGGGCTGGTCTATGGCTTG
GTGGCGTGGCTGGCGCGCCTGGGCCTGTGGCCCCAGCGTCTGCCATGGTTGCCTTGGGCGTGCGCGCTGAGTCTGGTTTC
AGCGTTGGGGTACGGCGGGCTCGCAGGGTTCGGTGTGCCGGTGCAGCGAGCTTGCCTGATGCTGGCGATGGTCCTGCTCT
GGCGTCTGCACTTCAGTCATCTGGGGGCGCTCCTGCCGTTGCTGGCCGCCCTGTGTGGCGTGCTGCTGATCGAACCGTTG
GCGAGCCTGTTGCCCGGGTTCTGGCTATCGTTCGCCGCAGTCGCGGTTCTGGTGTTCTGCTTTGCCGGGCGCCTCGGCGG
CTGGCGGCCGTGGCAAGCCTGGAGCAGGGCGCAATGGGTGGTCGCGGTGGGCTTGTTGCCGGCCTTGCTGGCGCTGGGTT
TGCCGATCAGCCTGACAGCGCCCCTGGCCAATCTGTTGGCGGTACCCTGGATCAGTTTTGCCGTGTTGCCGTTGGCGCTG
CTGGGCAGTGCGCTCTTGCCGCTGGGCCAGCCCGGTGAGCTGTTGCTGTGGTGGGCAGGCGGGTTGCTGGAAATATTGTT
TCAGCAGTTGGCGCTGTTGGGGCAATGGCGTCCGGCCTGGGAGCCCCAGGCATTGACGCCGTGGGCGGGACTGCTGGTCG
GATTGGGGGCGGCGTTGCTGTTGCTGCCCCGGGGGGTGCCGCTGCGTGGACTGGGGGGCGTGATGCTGATGGCTCTGTGG
GCTCCACGGGAGCCAGTGCCGCAGGGGCAGGTTGAAATCCTGCAACTGGATGTGGGGCAGGGCCTGGCCGTGCTGCTGCG
AACCCGCACGCACAGCCTGCTTTACGATGCCGGCCCCGCCAAGGGTGACATGGACCTGGGGGACCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTTGGCGTCAAGCACCTGGATCTGATGCTGATCAGTCATGGCCACGCCGATCATGCCGGCGGCGCAGCG
GCCATCGGCCGCGGTCTGCCGCTGGGTAGGGTGCTTGCGGGGGAGCCTGAACAATTACCGGAGGCTTTGCGGGCACGCCG
GTGCGTCAGTGGCGAGCGCTGGCACTGGGATGGGGTGGACTTCATGCTTTGGCAGTGGGCAGGGGGGCCGGCCGGTAACG
AGCGTTCCTGTGCGCTGCTGGTACAGGCCCAGGGCGAGCGGTTGTTACTGGCCGGCGATATGGAGGCTGGTGCCGAGCGG
GCTTGGCTGGCAGCGACCGATGCGCCGCGCATCGACTGGTTGCAGGCGCCGCACCATGGCAGTCGCAGCTCGTCCACCGA
GCCGTTCATCCGCGCTACGTCGCCAAGGGGCGTGATGATTTCCCGGGGGCATTACAACAGCTTCGGTCATCCGCATCCGC
AGGTCGTGGAGCGTTACCGGCGGTACGGGTTGAGCGTTCATGACACCGCGATCGAAGGCGCTTTGCGCCTACGCCTGGGC
ACCCATGGCGAGGTCGAGGGACTGCGGGCGCAGCGGCGGTTCTGGCGACAGGGGCAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(26-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-684)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.414

97.294

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.058

100

0.367