Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J5X93_RS18660 Genome accession   NZ_CP072559
Coordinates   4014458..4015093 (-) Length   211 a.a.
NCBI ID   WP_043214385.1    Uniprot ID   -
Organism   Pseudomonas sp. BYT-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4009458..4020093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X93_RS18630 (J5X93_18550) murB 4010552..4011568 (-) 1017 WP_250033811.1 UDP-N-acetylmuramate dehydrogenase -
  J5X93_RS18635 (J5X93_18555) - 4011565..4012029 (-) 465 WP_043214393.1 low molecular weight protein-tyrosine-phosphatase -
  J5X93_RS18640 (J5X93_18560) kdsB 4012029..4012793 (-) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J5X93_RS18645 (J5X93_18565) - 4012790..4012975 (-) 186 WP_003247142.1 Trm112 family protein -
  J5X93_RS18650 (J5X93_18570) lpxK 4013017..4014027 (-) 1011 WP_250033813.1 tetraacyldisaccharide 4'-kinase -
  J5X93_RS18655 (J5X93_18575) - 4014027..4014461 (-) 435 WP_043214387.1 biopolymer transporter ExbD -
  J5X93_RS18660 (J5X93_18580) exbB 4014458..4015093 (-) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J5X93_RS18665 (J5X93_18585) comA 4015204..4017423 (-) 2220 WP_250033815.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J5X93_RS18670 (J5X93_18590) - 4017566..4018207 (+) 642 WP_139205743.1 DUF2062 domain-containing protein -
  J5X93_RS18675 (J5X93_18595) - 4018091..4018870 (-) 780 WP_043214381.1 ABC transporter permease -
  J5X93_RS18680 (J5X93_18600) - 4018867..4019799 (-) 933 WP_070573244.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22828.07 Da        Isoelectric Point: 7.3616

>NTDB_id=554187 J5X93_RS18660 WP_043214385.1 4014458..4015093(-) (exbB) [Pseudomonas sp. BYT-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=554187 J5X93_RS18660 WP_043214385.1 4014458..4015093(-) (exbB) [Pseudomonas sp. BYT-1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCCCGGGTCATCCATGAGTTGGAGCGCTATAT
CGGTACATTGGGCACCATCGCCGCGATGGCCCCCTTGCTCGGCCTTCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACCCGGCCGTTCTCGCGGGTGGTATTTCCAAGGCCCTGGTCACCACGGCC
GCCGGCCTGATGGTGGGGATCCCGGCGGTCTTCTTCCACCGGTTCCTGCAGCGACGCATCGATGAGCTGGTCGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAGGTGCTGCAAGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815