Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J7649_RS09330 Genome accession   NZ_CP072549
Coordinates   1960574..1962001 (+) Length   475 a.a.
NCBI ID   WP_219307583.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955574..1967001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS09310 (J7649_09310) thrC 1955856..1956995 (+) 1140 WP_219307581.1 threonine synthase -
  J7649_RS09315 (J7649_09315) - 1957055..1958116 (-) 1062 WP_005249689.1 serine hydrolase -
  J7649_RS09320 (J7649_09320) - 1958336..1958971 (+) 636 WP_005108454.1 response regulator transcription factor GacA -
  J7649_RS09325 (J7649_09325) pilS 1958994..1960559 (+) 1566 WP_219310093.1 sensor histidine kinase Regulator
  J7649_RS09330 (J7649_09330) pilR 1960574..1962001 (+) 1428 WP_219307583.1 sigma-54-dependent transcriptional regulator Regulator
  J7649_RS09335 (J7649_09335) - 1962002..1963174 (-) 1173 WP_219307594.1 S41 family peptidase -
  J7649_RS09340 (J7649_09340) gpmI 1963205..1964752 (-) 1548 WP_219307596.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J7649_RS09345 (J7649_09345) lptG 1964877..1965947 (-) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 53703.94 Da        Isoelectric Point: 6.0365

>NTDB_id=554131 J7649_RS09330 WP_219307583.1 1960574..1962001(+) (pilR) [Acinetobacter lwoffii strain H7]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKWLANHQYDACLTDLNLPDGNGLELLDWIGNLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLAMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLDALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGIPNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNP
LTSEIIATETLMIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=554131 J7649_RS09330 WP_219307583.1 1960574..1962001(+) (pilR) [Acinetobacter lwoffii strain H7]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAAGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTCTGGAAGACGCTAAAAAATGGCTTGCCAATCATCAGTATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGGCACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAATATGGAAATCGCCATTGCTGCGCTCAAAGCAGGGGCTTTTGACTTTGTCAGCAA
ACCGATTAATCAAAAACACCTGGAGCAGCTCTTACAAAAAGCGCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ACGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGCTCACAAGCACCGGTTTTTATCACTGGCGAATCAGGCACAGGCAAGGAAGTCGTGGCCAATCTGGTACATCGCCTGAG
TAACCGCAACGAAGGTCCTTTTATTGCGATTAACTGCGGCGCCATTCCGACTGAGTTGATGGAAAGTGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGTGCTGCTCAGGACAAACAGGGCTTGATTCAATCTGCACATGGGGGCAGCCTATTTCTG
GATGAAATTGCAGAATTACCGCTTGCCATGCAGGTCAAACTGTTACGTGCCGTACAAGAAAAACGTATTCGTCCACTCGG
TTCAGATACCGAAATTGATGTGGATTTCCGTGTAATCAGTGCCACCCATCAGGATCTGGACGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTGATGGATCTGACTTTACCGCCGCTGCGTGAACGAGGCCAGGATATT
CTGTTATTGGCCGAACACTTTATTCAGAAGATTTGCCAGGAATGGGGCATTCCCAATAAAAAACTGACCGAACGCAGCAA
AGAGTTCTTATTGGGACAATATTACCCAGGTAATGTACGTGAATTGCGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGCGCACCGCTACGTCAGGCGCTAAACAGCCCTCAGGAGATGAATCCA
CTCACGAGCGAGATCATTGCGACCGAAACCCTGATGATTGCACCTAAAAAGCTACCTGAAGAGGGTCTAGAGCTGTATTT
GGAAAAGGTCGAAAAAGAGATTTTACTGAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCG
GCATGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGACTGGATACTGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.37

100

0.745
  pilR Pseudomonas aeruginosa PAK

49.351

97.263

0.48