Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LZ684_RS05965 Genome accession   NZ_CP090456
Coordinates   1235891..1236367 (-) Length   158 a.a.
NCBI ID   WP_001618788.1    Uniprot ID   -
Organism   Escherichia coli strain B379     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230891..1241367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ684_RS05950 (LZ684_05950) - 1234975..1235304 (-) 330 WP_001618791.1 TA system toxin CbtA family protein -
  LZ684_RS05955 (LZ684_05955) - 1235325..1235642 (-) 318 WP_001618790.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LZ684_RS05960 (LZ684_05960) - 1235661..1235882 (-) 222 WP_001618789.1 DUF987 domain-containing protein -
  LZ684_RS05965 (LZ684_05965) radC 1235891..1236367 (-) 477 WP_001618788.1 JAB domain-containing protein Machinery gene
  LZ684_RS05970 (LZ684_05970) - 1236383..1236841 (-) 459 WP_000211838.1 antirestriction protein -
  LZ684_RS05975 (LZ684_05975) - 1236939..1237178 (-) 240 WP_001115184.1 DUF905 domain-containing protein -
  LZ684_RS05980 (LZ684_05980) - 1237269..1240736 (-) 3468 WP_001618787.1 AIDA repeat-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18068.75 Da        Isoelectric Point: 8.7508

>NTDB_id=554130 LZ684_RS05965 WP_001618788.1 1235891..1236367(-) (radC) [Escherichia coli strain B379]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKALTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=554130 LZ684_RS05965 WP_001618788.1 1235891..1236367(-) (radC) [Escherichia coli strain B379]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCTGGCGAGACAACACCCAGCCAGGCAGACAAAGCCCTCACGCAGCGACTGGTACAGGTGCTTCAGTTGG
TGGATATCCGCGTCCCTGACCATCTGATTGTCGGCGGCAGGCAAATCTATTCGTTCGCAGAACACGGTTTGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38