Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J7649_RS09325 Genome accession   NZ_CP072549
Coordinates   1958994..1960559 (+) Length   521 a.a.
NCBI ID   WP_219310093.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1953994..1965559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS09305 (J7649_09305) - 1954492..1955799 (+) 1308 WP_180037291.1 homoserine dehydrogenase -
  J7649_RS09310 (J7649_09310) thrC 1955856..1956995 (+) 1140 WP_219307581.1 threonine synthase -
  J7649_RS09315 (J7649_09315) - 1957055..1958116 (-) 1062 WP_005249689.1 serine hydrolase -
  J7649_RS09320 (J7649_09320) - 1958336..1958971 (+) 636 WP_005108454.1 response regulator transcription factor GacA -
  J7649_RS09325 (J7649_09325) pilS 1958994..1960559 (+) 1566 WP_219310093.1 sensor histidine kinase Regulator
  J7649_RS09330 (J7649_09330) pilR 1960574..1962001 (+) 1428 WP_219307583.1 sigma-54-dependent transcriptional regulator Regulator
  J7649_RS09335 (J7649_09335) - 1962002..1963174 (-) 1173 WP_219307594.1 S41 family peptidase -
  J7649_RS09340 (J7649_09340) gpmI 1963205..1964752 (-) 1548 WP_219307596.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59456.63 Da        Isoelectric Point: 6.2937

>NTDB_id=554130 J7649_RS09325 WP_219310093.1 1958994..1960559(+) (pilS) [Acinetobacter lwoffii strain H7]
MAQQSSYSALNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTTDYQYPQLYYYALGIGVAINTVQLFALKWIRRLIQPQL
VMIFFSDVCILSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLVAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACTLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADIRD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=554130 J7649_RS09325 WP_219310093.1 1958994..1960559(+) (pilS) [Acinetobacter lwoffii strain H7]
ATGGCACAACAATCCAGTTATTCTGCACTCAATCAATATCATCTTGGTATCTGGTATAGCGCCTATCGCCTGCTAATCAG
CACCGGCCTGCTGCTGATTTTTCTGCTAACCTACCCTGAACTCACCACCGATTATCAATACCCGCAGCTGTATTATTATG
CGCTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGCGCTGAAATGGATCAGACGACTGATCCAGCCGCAGCTG
GTCATGATTTTCTTTAGCGATGTCTGCATTTTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGCT
GCTGTTTGTGATTACCATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTAGTCGTCACGCTGGTTGCTGTTA
TCAGCGTAATTTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCATCACTCAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGGCAGATCGCCATACGCCGTTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGTTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCCGCCGCCTGTACTCTTCTTGGAATTGAGTCAAAATACGGCCATGAGAAA
TTCACCTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAAACACTGGAAAATGGTGAGCGCTTTCAATT
TGAATCCCAGCAAAGTCGCTATAATATTCATGTGCAGGTACAAAAACTGATTGTGCCGCATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAGCTATCAGCCAGTATT
GCGCATGAAATTCGTAATCCCTTGGCGGCCATTGTACAGGCCAATGATTTGTATCTGGACTCAGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGTCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCCGATATTCGCGAT
CAGATTCAATTTAATATTGATATCCCGCTGGTGATTCAGTTTGATGAAGCACAGTTCCGGCAAATCCTGATTAATCTGAT
TCGTAATGCGATTCGTCACAATTCAGCCGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAAGCTCTATTGTTCAAACCCTTTTTTAGCACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.436

96.929

0.547