Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J7649_RS08495 Genome accession   NZ_CP072549
Coordinates   1787652..1788287 (+) Length   211 a.a.
NCBI ID   WP_219307389.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782652..1793287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS08485 (J7649_08485) - 1784783..1785586 (-) 804 WP_005249885.1 NAD-dependent epimerase/dehydratase family protein -
  J7649_RS08490 (J7649_08490) recG 1785620..1787665 (+) 2046 WP_219307387.1 ATP-dependent DNA helicase RecG -
  J7649_RS08495 (J7649_08495) comF 1787652..1788287 (+) 636 WP_219307389.1 ComF family protein Machinery gene
  J7649_RS08500 (J7649_08500) - 1788292..1788693 (-) 402 WP_219307391.1 NUDIX hydrolase -
  J7649_RS08505 (J7649_08505) - 1788724..1789314 (-) 591 WP_219307393.1 TIGR00730 family Rossman fold protein -
  J7649_RS08510 (J7649_08510) - 1789467..1790480 (+) 1014 WP_005248226.1 CorA family divalent cation transporter -
  J7649_RS08515 (J7649_08515) - 1790587..1790877 (-) 291 WP_219307395.1 STAS domain-containing protein -
  J7649_RS08520 (J7649_08520) - 1790893..1791525 (-) 633 WP_005249877.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  J7649_RS08525 (J7649_08525) - 1791544..1792221 (-) 678 WP_044112243.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J7649_RS08530 (J7649_08530) mlaE 1792221..1793000 (-) 780 WP_004281531.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24390.54 Da        Isoelectric Point: 9.2580

>NTDB_id=554119 J7649_RS08495 WP_219307389.1 1787652..1788287(+) (comF) [Acinetobacter lwoffii strain H7]
MPMFKLLEHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=554119 J7649_RS08495 WP_219307389.1 1787652..1788287(+) (comF) [Acinetobacter lwoffii strain H7]
ATGCCTATGTTTAAACTACTGGAACATGGAAAATCCTGGCTGACTCGCTTGCAGCCCTGCCAGCTGTGTCTGACTGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCTTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCTTACCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTACCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCTGAGCGCGGTTATAATCAATCTCTAGTGCTGGCCAAACATGTGGCAAAACAGTTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTACGGTATCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588