Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J7D37_RS15755 Genome accession   NZ_CP072526
Coordinates   3303446..3304081 (+) Length   211 a.a.
NCBI ID   WP_000472269.1    Uniprot ID   A0A383KXM5
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298446..3309081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS15740 (J7D37_15740) adeT2 3299506..3300492 (-) 987 WP_038347737.1 putative multidrug efflux protein AdeT2 -
  J7D37_RS15745 (J7D37_15745) - 3300572..3301387 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  J7D37_RS15750 (J7D37_15750) recG 3301408..3303453 (+) 2046 WP_038347735.1 ATP-dependent DNA helicase RecG -
  J7D37_RS15755 (J7D37_15755) comF 3303446..3304081 (+) 636 WP_000472269.1 ComF family protein Machinery gene
  J7D37_RS15760 (J7D37_15760) - 3304084..3304485 (-) 402 WP_038347733.1 NUDIX hydrolase -
  J7D37_RS15765 (J7D37_15765) - 3304500..3305081 (-) 582 WP_002133678.1 TIGR00730 family Rossman fold protein -
  J7D37_RS15770 (J7D37_15770) - 3305239..3306252 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  J7D37_RS15775 (J7D37_15775) - 3306322..3306609 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  J7D37_RS15780 (J7D37_15780) - 3306621..3307262 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  J7D37_RS15785 (J7D37_15785) - 3307289..3307969 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J7D37_RS15790 (J7D37_15790) mlaE 3307969..3308745 (-) 777 WP_209303312.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24521.60 Da        Isoelectric Point: 9.5702

>NTDB_id=554044 J7D37_RS15755 WP_000472269.1 3303446..3304081(+) (comF) [Acinetobacter baumannii strain DETAB-E227]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=554044 J7D37_RS15755 WP_000472269.1 3303446..3304081(+) (comF) [Acinetobacter baumannii strain DETAB-E227]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A383KXM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

100

100

1
  comF Acinetobacter baumannii strain A118

99.052

100

0.991