Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J7W01_RS16445 Genome accession   NZ_CP072525
Coordinates   3172144..3172788 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3167144..3177788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS16410 (J7W01_16410) mrpB 3168336..3168767 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  J7W01_RS16415 (J7W01_16415) mrpC 3168767..3169108 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  J7W01_RS16420 (J7W01_16420) mrpD 3169101..3170582 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  J7W01_RS16425 (J7W01_16425) mrpE 3170588..3171064 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  J7W01_RS16430 (J7W01_16430) mrpF 3171064..3171348 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  J7W01_RS16435 (J7W01_16435) mnhG 3171332..3171706 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  J7W01_RS16440 (J7W01_16440) yuxO 3171745..3172125 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  J7W01_RS16445 (J7W01_16445) comA 3172144..3172788 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  J7W01_RS16450 (J7W01_16450) comP 3172869..3175169 (-) 2301 WP_088300729.1 histidine kinase Regulator
  J7W01_RS16455 (J7W01_16455) comX 3175181..3175345 (-) 165 WP_015384519.1 competence pheromone ComX -
  J7W01_RS16460 (J7W01_16460) - 3175358..3176218 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  J7W01_RS16465 (J7W01_16465) degQ 3176402..3176542 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  J7W01_RS21525 - 3176764..3176826 (+) 63 Protein_3203 hypothetical protein -
  J7W01_RS16470 (J7W01_16470) - 3177005..3177373 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=553993 J7W01_RS16445 WP_003220716.1 3172144..3172788(-) (comA) [Bacillus subtilis strain YB-04]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=553993 J7W01_RS16445 WP_003220716.1 3172144..3172788(-) (comA) [Bacillus subtilis strain YB-04]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1