Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J7W01_RS12150 Genome accession   NZ_CP072525
Coordinates   2397305..2397640 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain YB-04     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2392305..2402640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS12130 (J7W01_12130) gcvT 2392898..2393986 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  J7W01_RS12135 (J7W01_12135) hepAA 2394427..2396100 (+) 1674 WP_041850014.1 SNF2-related protein -
  J7W01_RS12140 (J7W01_12140) yqhG 2396121..2396915 (+) 795 WP_003230200.1 YqhG family protein -
  J7W01_RS12145 (J7W01_12145) sinI 2397098..2397271 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  J7W01_RS12150 (J7W01_12150) sinR 2397305..2397640 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  J7W01_RS12155 (J7W01_12155) tasA 2397733..2398518 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  J7W01_RS12160 (J7W01_12160) sipW 2398582..2399154 (-) 573 WP_003246088.1 signal peptidase I SipW -
  J7W01_RS12165 (J7W01_12165) tapA 2399138..2399899 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  J7W01_RS12170 (J7W01_12170) yqzG 2400171..2400497 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  J7W01_RS12175 (J7W01_12175) spoIITA 2400539..2400718 (-) 180 WP_003230176.1 YqzE family protein -
  J7W01_RS12180 (J7W01_12180) comGG 2400789..2401163 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  J7W01_RS12185 (J7W01_12185) comGF 2401164..2401547 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  J7W01_RS12190 (J7W01_12190) comGE 2401573..2401920 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  J7W01_RS12195 (J7W01_12195) comGD 2401904..2402335 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  J7W01_RS12200 (J7W01_12200) comGC 2402325..2402621 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=553972 J7W01_RS12150 WP_003226345.1 2397305..2397640(+) (sinR) [Bacillus subtilis strain YB-04]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=553972 J7W01_RS12150 WP_003226345.1 2397305..2397640(+) (sinR) [Bacillus subtilis strain YB-04]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1