Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   J7445_RS12040 Genome accession   NZ_CP072524
Coordinates   2552174..2554216 (+) Length   680 a.a.
NCBI ID   WP_141752018.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2547174..2559216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS12025 (J7445_12025) - 2548652..2549911 (-) 1260 WP_019271522.1 N-acetylmuramoyl-L-alanine amidase -
  J7445_RS12030 (J7445_12030) tsaE 2549893..2550369 (-) 477 WP_070654756.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  J7445_RS12035 (J7445_12035) asd 2550710..2551825 (+) 1116 WP_070654758.1 aspartate-semialdehyde dehydrogenase -
  J7445_RS12040 (J7445_12040) recG 2552174..2554216 (+) 2043 WP_141752018.1 ATP-dependent DNA helicase RecG Machinery gene
  J7445_RS12045 (J7445_12045) - 2554515..2554625 (+) 111 Protein_2330 IS5/IS1182 family transposase -
  J7445_RS12050 (J7445_12050) pilE 2555338..2555796 (+) 459 WP_209283078.1 pilin Machinery gene
  J7445_RS12055 (J7445_12055) - 2555892..2556371 (+) 480 WP_070654762.1 pilin -
  J7445_RS12060 (J7445_12060) tyrS 2556715..2558010 (-) 1296 WP_209283079.1 tyrosine--tRNA ligase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75170.98 Da        Isoelectric Point: 6.8158

>NTDB_id=553929 J7445_RS12040 WP_141752018.1 2552174..2554216(+) (recG) [Neisseria sicca strain NS20201025]
MMTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKIRDAESSGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQAAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGCDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPLLIEQNPEIVEAHLERWLASREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=553929 J7445_RS12040 WP_141752018.1 2552174..2554216(+) (recG) [Neisseria sicca strain NS20201025]
ATGATGACGCCCGAAACCCAGAAACAGCTCAAAATCACCGACGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTTTTGCATCTGCCGCTGCGTTATGAGGACGAGACGCACATCATGCCGATTAAGGACGCGCCGATCG
GCGTACCGTGTCAGGTCGAGGGCGAAGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATC
GCCGACGATTCCGGCAGCGTCCTTTTTTTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGATGGCGGCCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGGTTTTACGGCGATGAGATGATTCATCCCAAAATCCGCGATGCCGAGA
GCAGCGGTTTGGCGGAAAGCCTCACGCCTGTCTATCCGACTGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTCGC
CGAAAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTTACCATCCACCAGCTTTCCGACGGCGCGCTTCCTGCATGGC
AGCGGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGGCTGGCGCGGCAGAAGCGCGTCAGCGGCACGGCG
GCGGCATTGGGCGGCGACGGCACGTTGACCCAAGCCCTGCGCCACGCCTTACCGTTTGCCCTGACCGATGCCCAAGAAAG
AGTCGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGTGGCA
AAACCATTGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCCGGCGCGCAGGCGGCTGTGATGGCGCCGACCGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTCGAACCTTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCA
GCGTAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGACGTCGAGTTTCAAAATCTAGGTTTGGTGATTGTGGACGAGCAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTCAAAAACAAAGGGTGCGACGTCCACCAGTTGATGATGTCCGCCACCCCCATCCCGCGCACGCTTGCCATGAGTTT
CTTCGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCACTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCTACCGAAACCCTCGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACAT
CGGCTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGCGGGTCGTCTGAATGTAT
TGGTCGCCACCACCGTCATTGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTTCACCAATTACGCGGACGGGTAGGGCGCGGCGCGGCAGAAAGCGTATGCGTCCTCCTATTTGCCGA
ACCCTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTGATTTACGAACACACCGACGGCTTCGAAATTGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGTGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTTGCCAACCTTGAAGAA
GACCTGCACCTCTTGGAACAAGCGCGCGAAATCGCCCCCTTGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATCT
GGAAAGGTGGCTTGCCAGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(15-164)

DEAD/DEAH box helicase (DEAD)

(262-421)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.382

100

0.934