Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J7445_RS11635 Genome accession   NZ_CP072524
Coordinates   2473593..2474207 (+) Length   204 a.a.
NCBI ID   WP_209283069.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2468593..2479207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS11625 (J7445_11625) - 2469935..2472334 (-) 2400 WP_070655375.1 penicillin-binding protein 1A -
  J7445_RS11630 (J7445_11630) pilM 2472482..2473591 (+) 1110 WP_070655373.1 type IV pilus assembly protein PilM -
  J7445_RS11635 (J7445_11635) pilN 2473593..2474207 (+) 615 WP_209283069.1 PilN domain-containing protein Machinery gene
  J7445_RS11640 (J7445_11640) pilO 2474208..2474894 (+) 687 WP_019270411.1 type 4a pilus biogenesis protein PilO -
  J7445_RS11645 (J7445_11645) pilP 2474912..2475466 (+) 555 WP_070655369.1 pilus assembly protein PilP Machinery gene
  J7445_RS11650 (J7445_11650) pilQ 2475485..2477620 (+) 2136 WP_070655368.1 type IV pilus secretin PilQ Machinery gene
  J7445_RS11655 (J7445_11655) - 2478058..2478594 (+) 537 WP_244969483.1 shikimate kinase -
  J7445_RS11660 (J7445_11660) - 2478668..2479159 (+) 492 Protein_2257 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23177.61 Da        Isoelectric Point: 5.1925

>NTDB_id=553926 J7445_RS11635 WP_209283069.1 2473593..2474207(+) (pilN) [Neisseria sicca strain NS20201025]
MTELIKINLLPYREEIKQRKRQQFKILMLSSLLIGVGLSAIAYLAITNAISDQESRNAFLEAEITKLDNDLGEIKKLQQE
KENFLAKKQKVEELQEKRSQAAYIIDSLNVVIPDNTYITSLDAENPTSYKITGRAISDNKIAMFMRSLPSTGIFMQPELL
EIKKIDNYQEFNIKSMIGSASIPVKSERETINDDSTKAQNGEEK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=553926 J7445_RS11635 WP_209283069.1 2473593..2474207(+) (pilN) [Neisseria sicca strain NS20201025]
ATGACTGAATTAATTAAAATTAACCTTCTTCCATATAGAGAAGAAATTAAGCAACGTAAAAGACAGCAATTTAAAATTTT
GATGCTTTCTTCGTTATTAATAGGAGTTGGTTTATCTGCAATAGCTTATTTAGCGATCACTAATGCTATTAGTGATCAAG
AAAGTAGGAATGCATTTTTGGAAGCAGAAATTACCAAGTTGGATAATGATTTAGGAGAAATAAAAAAATTACAGCAGGAA
AAAGAAAACTTCTTGGCTAAAAAGCAAAAAGTTGAGGAGTTGCAAGAAAAACGTTCCCAAGCTGCATATATCATCGATAG
TTTGAATGTGGTTATTCCAGATAATACTTATATCACTTCTCTTGATGCAGAAAATCCGACTTCTTATAAGATTACAGGTC
GAGCGATTAGCGATAATAAAATTGCCATGTTTATGCGGTCTTTGCCAAGTACAGGTATTTTTATGCAGCCAGAACTTTTG
GAAATTAAGAAAATTGATAATTATCAAGAGTTTAATATTAAATCTATGATTGGTTCTGCGAGTATTCCAGTCAAGTCGGA
GAGAGAAACAATTAATGATGATTCGACGAAAGCACAGAACGGGGAGGAAAAGTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

55.932

86.765

0.485