Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   J7445_RS11270 Genome accession   NZ_CP072524
Coordinates   2388590..2389288 (-) Length   232 a.a.
NCBI ID   WP_070655407.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2383590..2394288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS11250 (J7445_11250) cysS 2384166..2385587 (-) 1422 WP_070655403.1 cysteine--tRNA ligase -
  J7445_RS11255 (J7445_11255) - 2385584..2386099 (-) 516 WP_019269889.1 hypothetical protein -
  J7445_RS11260 (J7445_11260) - 2386110..2387156 (-) 1047 WP_019269890.1 AAA family ATPase -
  J7445_RS11265 (J7445_11265) obgE 2387240..2388394 (-) 1155 WP_209283063.1 GTPase ObgE -
  J7445_RS11270 (J7445_11270) dsbA1 2388590..2389288 (-) 699 WP_070655407.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  J7445_RS11275 (J7445_11275) murJ 2389499..2391040 (+) 1542 WP_070655409.1 murein biosynthesis integral membrane protein MurJ -
  J7445_RS11280 (J7445_11280) - 2391232..2392206 (+) 975 WP_083310411.1 glycosyltransferase -
  J7445_RS11285 (J7445_11285) - 2392275..2393075 (-) 801 WP_070655411.1 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25228.91 Da        Isoelectric Point: 6.0254

>NTDB_id=553925 J7445_RS11270 WP_070655407.1 2388590..2389288(-) (dsbA1) [Neisseria sicca strain NS20201025]
MKLKALALTAALLALTACDNKAQTSVPADSAPAASAASAAPVALVEGLNYTTLSTPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKTFKDDTYLRTEHVVWGDEMKPLARLAAAVDMAVADTKDIANSHIFDAMVNQKVKLQDPETLKKWLAEQTA
FDGKKVLAAYESPESQTRADKMAELTNTYKIDGTPTVIVGGKYKVEFADWESGMKTIDLLADKVREEQKTAK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=553925 J7445_RS11270 WP_070655407.1 2388590..2389288(-) (dsbA1) [Neisseria sicca strain NS20201025]
ATGAAACTGAAAGCCTTGGCGCTTACCGCCGCCCTGCTTGCCCTGACCGCCTGCGACAACAAAGCCCAAACCAGCGTCCC
TGCCGACAGCGCGCCCGCAGCCTCAGCAGCTTCCGCTGCACCTGTCGCTTTAGTTGAGGGGCTTAACTACACCACACTCA
GCACACCTATTCCCCAACAGCAGGCAGGTAAAGTCGAAGTCCTCGAATTTTTCGGCTACTTCTGTCCACACTGCGCCCAC
CTCGAGCCCGTTTTAAGCAAACACGCCAAAACCTTCAAAGACGACACCTACCTTCGTACTGAACACGTTGTTTGGGGCGA
TGAGATGAAACCGTTGGCGCGCCTTGCTGCCGCCGTCGATATGGCGGTCGCAGACACCAAAGACATTGCAAACAGCCATA
TCTTTGATGCTATGGTTAATCAGAAAGTCAAACTGCAAGACCCTGAAACCCTCAAAAAATGGTTGGCCGAGCAAACCGCT
TTTGACGGCAAAAAAGTCCTCGCCGCCTACGAATCCCCCGAAAGCCAAACCCGCGCAGACAAAATGGCAGAGCTGACCAA
CACCTACAAAATTGACGGCACGCCTACCGTCATTGTCGGCGGCAAATACAAAGTCGAATTTGCCGACTGGGAATCAGGTA
TGAAAACCATAGACCTGCTTGCAGACAAAGTACGCGAAGAACAAAAAACTGCCAAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

83.262

100

0.836
  dsbA2 Neisseria meningitidis MC58

77.358

91.379

0.707