Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LZM82_RS07900 Genome accession   NZ_CP090399
Coordinates   1743485..1744129 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain PanChol     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738485..1749129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZM82_RS07860 (LZM82_07860) - 1738555..1739040 (+) 486 WP_001261948.1 GNAT family N-acetyltransferase -
  LZM82_RS07865 (LZM82_07865) - 1739037..1740155 (-) 1119 WP_001190450.1 GGDEF domain-containing protein -
  LZM82_RS07890 (LZM82_07890) pgsA 1741048..1741605 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LZM82_RS07895 (LZM82_07895) uvrC 1741653..1743485 (-) 1833 WP_000107095.1 excinuclease ABC subunit UvrC -
  LZM82_RS07900 (LZM82_07900) letA 1743485..1744129 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  LZM82_RS07905 (LZM82_07905) - 1744505..1746868 (+) 2364 WP_000687840.1 DNA polymerase II -
  LZM82_RS07910 (LZM82_07910) - 1746840..1748939 (-) 2100 WP_000948258.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=553896 LZM82_RS07900 WP_001890391.1 1743485..1744129(-) (letA) [Vibrio cholerae strain PanChol]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=553896 LZM82_RS07900 WP_001890391.1 1743485..1744129(-) (letA) [Vibrio cholerae strain PanChol]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGTATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGTCAGTTTTCGCCCGCCTCTGAAAATCCTTTTGCTGATCTCTCCGAGCGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509