Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J7M36_RS00750 Genome accession   NZ_CP072503
Coordinates   193805..195643 (+) Length   612 a.a.
NCBI ID   WP_143248200.1    Uniprot ID   -
Organism   Bifidobacterium dentium strain E7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 188805..200643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M36_RS00730 (J7M36_00730) thiS 189012..189206 (-) 195 WP_003837883.1 sulfur carrier protein ThiS -
  J7M36_RS00735 (J7M36_00735) - 190071..191096 (+) 1026 WP_143248204.1 aldo/keto reductase -
  J7M36_RS00740 (J7M36_00740) - 191260..191760 (+) 501 WP_168445308.1 MarR family transcriptional regulator -
  J7M36_RS00745 (J7M36_00745) rcrP 192046..193803 (+) 1758 WP_080821571.1 ABC transporter ATP-binding protein Regulator
  J7M36_RS00750 (J7M36_00750) rcrQ 193805..195643 (+) 1839 WP_143248200.1 ABC transporter ATP-binding protein Regulator
  J7M36_RS00755 (J7M36_00755) - 195763..196902 (-) 1140 WP_080821569.1 ATP-binding protein -
  J7M36_RS00760 (J7M36_00760) - 197080..198126 (-) 1047 WP_080821568.1 FAD:protein FMN transferase -
  J7M36_RS00765 (J7M36_00765) - 198319..199725 (+) 1407 WP_080821567.1 MFS transporter -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67222.90 Da        Isoelectric Point: 6.6562

>NTDB_id=553785 J7M36_RS00750 WP_143248200.1 193805..195643(+) (rcrQ) [Bifidobacterium dentium strain E7]
MPRGPMGRGPAEKPKDFGGVMKKLIRFCRRYIPVIIIALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAIVHGKPVMNSI
DFTAVGRIAWLLVALYVGYAVLCYLQSWLMASVTQRTAQQLREEIGRKINRLPLKYFDKVSYGDVLSRITNDVDAIGQTL
GQSLGSLITSVTLFFGALIMMFYNNVILTLCAIGSALLGLIVMGGIMKASQQYFARQQAALGDVNGHVEEMYTGHTVVKA
YCGEADSISRFERYNQDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQPLS
QFAQAFQNLQRCAAASERVFGFLEEPELADESDKRPLLGVDADGRPQPVRGDVEFSHVRFGYESDKTIIHDFSASVKSGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKGVTDEQIV
AACKAVGLHHYIMSLPDGYDTILDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMDGGDIVERGTHEELLAKGGFYADIYNSQFTLAG

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=553785 J7M36_RS00750 WP_143248200.1 193805..195643(+) (rcrQ) [Bifidobacterium dentium strain E7]
ATGCCTAGGGGACCAATGGGACGTGGACCTGCTGAAAAACCGAAGGATTTCGGCGGTGTGATGAAGAAACTCATACGTTT
CTGCCGCCGCTACATTCCCGTGATCATCATCGCGCTGGTGCTTGGCGCAGCCGGAACCGTATGCCAGATCATCGGGCCCG
ACAAACTCAAGGACATGACCAATGAGATCACCAAGGGACTGCCGGCCATCGTACACGGCAAGCCGGTGATGAACTCGATC
GACTTCACCGCGGTCGGCCGTATCGCATGGCTGCTGGTGGCGTTGTATGTCGGCTATGCGGTGCTGTGCTATCTGCAAAG
CTGGCTGATGGCAAGCGTGACGCAACGCACCGCGCAACAGCTGCGCGAGGAGATCGGCCGGAAGATCAATCGCCTGCCGC
TCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTGAGCCGCATTACCAACGATGTGGACGCGATCGGGCAGACGCTC
GGCCAGTCGCTGGGCTCGCTGATTACGTCGGTCACGCTGTTCTTCGGTGCGCTGATCATGATGTTCTACAACAACGTGAT
CCTAACGTTGTGCGCCATCGGCTCCGCACTGCTCGGCCTGATCGTGATGGGCGGCATCATGAAGGCCTCGCAACAATACT
TCGCGCGCCAGCAGGCGGCCCTCGGCGACGTGAACGGCCATGTTGAGGAGATGTATACCGGGCATACCGTGGTCAAGGCG
TACTGTGGCGAGGCCGATTCCATCAGCCGTTTCGAACGCTACAACCAGGACCTGTACGTGTCTGGTTGGAAGAGCCAGTT
CCTGTCCGGCCTGATGATGCCGCTGATGAATTTCATCGGTAATTTCGGCTATGTGGTCGTATGCGTGGTCGGTGCGGTGC
TTGCGATGGATGGCAAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTGTCG
CAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCCGCCGCATCCGAGCGCGTGTTCGGCTTCCTGGAGGAGCCGGA
GTTGGCCGACGAATCCGATAAACGGCCGTTGCTCGGCGTCGATGCGGACGGCAGGCCGCAACCGGTGCGTGGCGACGTGG
AATTCAGCCACGTACGCTTCGGCTACGAATCCGACAAAACGATCATCCACGACTTCTCCGCTTCGGTGAAGTCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACGATGGTGAACCTGCTTATGCGCTTCTACGAGATTTCCGG
CGGCACGATTTCGATTGACGGCGTCGATACCAAATCGGTGCCGCGCTGGAATGTGCACGATCAGTTCTCGATGGTGCTGC
AGGATACGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCATATTCCAAGAAGGGCGTGACCGACGAGCAGATCGTC
GCCGCATGCAAGGCCGTTGGGTTGCACCACTACATCATGTCGCTGCCGGATGGCTATGACACGATTCTCGATGACAAGGC
GTCGCTGTCGCAGGGTCAGAAGCAGTTGCTGACGATTGCGCGCGCGATGGTGGAGGATGCGCCGATCCTGATTCTGGACG
AGGCGACCTCTTCCGTCGATACGCGTACCGAAGAACTGATTCAGAAGGCGATGGACGCGCTGACGGTGGGGCGTACGAGT
TTCGTGATCGCGCATCGCCTGTCGACGATTCGTGACGCCGACATGATTCTGGTGATGGACGGCGGCGATATCGTAGAGCG
CGGTACGCACGAGGAGCTGCTTGCGAAGGGTGGTTTCTACGCCGATATCTACAACAGCCAGTTCACGCTGGCTGGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-319)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.484

96.569

0.526