Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LZ178_RS06530 Genome accession   NZ_CP090375
Coordinates   1355315..1356187 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1350315..1361187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS06500 (LZ178_06485) - 1350462..1351229 (+) 768 WP_000176395.1 ribonuclease HII -
  LZ178_RS06505 (LZ178_06490) sucC 1351338..1352504 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  LZ178_RS06510 (LZ178_06495) sucD 1352526..1353434 (+) 909 WP_000110258.1 succinate--CoA ligase subunit alpha -
  LZ178_RS06515 - 1353661..1353716 (+) 56 Protein_1276 YSIRK-type signal peptide-containing protein -
  LZ178_RS06520 (LZ178_06505) - 1353721..1353873 (+) 153 Protein_1277 cell wall hydrolase -
  LZ178_RS06525 (LZ178_06510) fmhC 1353901..1355144 (+) 1244 Protein_1278 FemA/FemB family glycyltransferase FmhC -
  LZ178_RS06530 (LZ178_06515) dprA 1355315..1356187 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  LZ178_RS06535 (LZ178_06520) topA 1356361..1358436 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  LZ178_RS06540 (LZ178_06525) trmFO 1358592..1359899 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=553783 LZ178_RS06530 WP_000620182.1 1355315..1356187(+) (dprA) [Staphylococcus aureus strain GD4SA108-1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=553783 LZ178_RS06530 WP_000620182.1 1355315..1356187(+) (dprA) [Staphylococcus aureus strain GD4SA108-1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986