Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J7M33_RS09925 Genome accession   NZ_CP072501
Coordinates   2275167..2277038 (-) Length   623 a.a.
NCBI ID   WP_209153258.1    Uniprot ID   -
Organism   Bifidobacterium longum strain K15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270167..2282038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M33_RS09910 (J7M33_09910) - 2270353..2271771 (-) 1419 WP_209153255.1 MFS transporter -
  J7M33_RS09915 (J7M33_09915) - 2271926..2272972 (+) 1047 WP_209153256.1 FAD:protein FMN transferase -
  J7M33_RS09920 (J7M33_09920) rcrQ 2273125..2274954 (-) 1830 WP_209153257.1 ABC transporter ATP-binding protein Regulator
  J7M33_RS09925 (J7M33_09925) rcrP 2275167..2277038 (-) 1872 WP_209153258.1 ABC transporter ATP-binding protein Regulator
  J7M33_RS09930 (J7M33_09930) - 2277290..2277820 (-) 531 WP_012472097.1 MarR family transcriptional regulator -
  J7M33_RS09935 (J7M33_09935) - 2278182..2278745 (+) 564 WP_007055052.1 BRO family protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68061.61 Da        Isoelectric Point: 5.3091

>NTDB_id=553779 J7M33_RS09925 WP_209153258.1 2275167..2277038(-) (rcrP) [Bifidobacterium longum strain K15]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTMASNVSYGDQPGESADVEMADTSTPAGRKREAALIAAGKAAEGADMPA
EQLNRIKAAADVAQASEFVERMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=553779 J7M33_RS09925 WP_209153258.1 2275167..2277038(-) (rcrP) [Bifidobacterium longum strain K15]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTCGCCGTCTACTGGATCGGTGCCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCAGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCAT
TCATCGGTTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCATGGCCTCCAACGTGAGCTACGGCGACCAGCCGGGCGAATCGGCGGACGTCGAGATGGCGGACA
CCTCCACTCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATGCCGGCC
GAGCAGCTGAATCGCATCAAGGCCGCGGCCGACGTGGCCCAGGCCAGCGAATTCGTGGAGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAGGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGATCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(60-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.499

100

0.493