Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IUD23_RS07135 Genome accession   NZ_CP090316
Coordinates   1593526..1594188 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1588526..1599188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS07120 (IUD23_07120) - 1588760..1590001 (+) 1242 WP_038230151.1 lipoprotein-releasing ABC transporter permease subunit -
  IUD23_RS07125 (IUD23_07125) lolD 1589994..1590716 (+) 723 WP_038230153.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  IUD23_RS07130 (IUD23_07130) comA 1591064..1593541 (+) 2478 WP_234056436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IUD23_RS07135 (IUD23_07135) exbB 1593526..1594188 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IUD23_RS07140 (IUD23_07140) - 1594193..1594630 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  IUD23_RS07145 (IUD23_07145) msbA 1594648..1596396 (+) 1749 WP_004089264.1 lipid A export permease/ATP-binding protein MsbA -
  IUD23_RS07150 (IUD23_07150) lpxK 1596393..1597412 (+) 1020 WP_038230156.1 tetraacyldisaccharide 4'-kinase -
  IUD23_RS07155 (IUD23_07155) - 1597828..1598505 (-) 678 WP_234056269.1 contractile injection system protein, VgrG/Pvc8 family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=553582 IUD23_RS07135 WP_004085189.1 1593526..1594188(+) (exbB) [Xylella fastidiosa subsp. morus strain Riv16]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=553582 IUD23_RS07135 WP_004085189.1 1593526..1594188(+) (exbB) [Xylella fastidiosa subsp. morus strain Riv16]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441