Detailed information NTG0553581

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IUD23_RS07130
• Genome accession: NZ_CP090316
• Coordinates: 1591064..1593541 (+)
• Length: 825 a.a.
• NCBI ID: WP_234056436.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv16
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1586064..1598541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD23_RS07105 (IUD23_07105)	-	1587177..1587962 (+)	786	WP_004089282.1	succinate dehydrogenase iron-sulfur subunit	-
IUD23_RS07110 (IUD23_07110)	-	1588083..1588331 (+)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
IUD23_RS07115 (IUD23_07115)	-	1588363..1588734 (+)	372	WP_234056268.1	hypothetical protein	-
IUD23_RS07120 (IUD23_07120)	-	1588760..1590001 (+)	1242	WP_038230151.1	lipoprotein-releasing ABC transporter permease subunit	-
IUD23_RS07125 (IUD23_07125)	lolD	1589994..1590716 (+)	723	WP_038230153.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
IUD23_RS07130 (IUD23_07130)	comA	1591064..1593541 (+)	2478	WP_234056436.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IUD23_RS07135 (IUD23_07135)	exbB	1593526..1594188 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
IUD23_RS07140 (IUD23_07140)	-	1594193..1594630 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
IUD23_RS07145 (IUD23_07145)	msbA	1594648..1596396 (+)	1749	WP_004089264.1	lipid A export permease/ATP-binding protein MsbA	-
IUD23_RS07150 (IUD23_07150)	lpxK	1596393..1597412 (+)	1020	WP_038230156.1	tetraacyldisaccharide 4'-kinase	-
IUD23_RS07155 (IUD23_07155)	-	1597828..1598505 (-)	678	WP_234056269.1	contractile injection system protein, VgrG/Pvc8 family	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90849.93 Da
• Isoelectric Point: 9.5754

>NTDB_id=553581 IUD23_RS07130 WP_234056436.1 1591064..1593541(+) (comA) [Xylella fastidiosa subsp. morus strain Riv16]
MDDMKPEQRHMLQRCWVDVLSVIRHATFLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVAPGPRSALHAGSVWQLHVRLRAPHSLMNPGGFDSERYALAQGIVATGYVRTPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDG
HAAPCRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNFFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGMPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=553581 IUD23_RS07130 WP_234056436.1 1591064..1593541(+) (comA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGGACGATATGAAACCCGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAAC
GTTCCTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGGCGTGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGCACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGATGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
CGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCGTCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCTTGGCGTTGGCCGCGGCCACTCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGTCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTTTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTATGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACTTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Competence protein (Competence) (253-521)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Domain of unknown function (DUF4131) (DUF4131) (59-215)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.59	100	0.378