Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IUD23_RS05860 Genome accession   NZ_CP090316
Coordinates   1305844..1307454 (+) Length   536 a.a.
NCBI ID   WP_038228612.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300844..1312454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS05845 (IUD23_05845) - 1302560..1303180 (-) 621 WP_038228608.1 hypothetical protein -
  IUD23_RS05850 (IUD23_05850) sucD 1303525..1304397 (-) 873 WP_038228610.1 succinate--CoA ligase subunit alpha -
  IUD23_RS05855 (IUD23_05855) sucC 1304426..1305589 (-) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  IUD23_RS05860 (IUD23_05860) pilS 1305844..1307454 (+) 1611 WP_038228612.1 ATP-binding protein Regulator
  IUD23_RS05865 (IUD23_05865) - 1307641..1309053 (+) 1413 WP_020851962.1 sigma-54 dependent transcriptional regulator -
  IUD23_RS05870 (IUD23_05870) pilB 1309147..1310880 (-) 1734 WP_012338105.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IUD23_RS05875 (IUD23_05875) pilA 1311720..1312154 (-) 435 WP_038228615.1 pilin Machinery gene

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59065.38 Da        Isoelectric Point: 6.2891

>NTDB_id=553572 IUD23_RS05860 WP_038228612.1 1305844..1307454(+) (pilS) [Xylella fastidiosa subsp. morus strain Riv16]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSLLVDPESDPHLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELL
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETVAALLGYDRQLVE
SDYDLATVAPELTMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLGIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=553572 IUD23_RS05860 WP_038228612.1 1305844..1307454(+) (pilS) [Xylella fastidiosa subsp. morus strain Riv16]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCGTTGTATCGGAT
CTTGGAGGCTGGATTGATCGCGGCCCTGGTGTTCAGTCCGGTGTCGCTATTGGTGGATCCTGAGAGTGATCCACATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACACCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCTCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCTGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACTGTACTCAGTGAGGGTGACTCCTCACGTTCACTGGCTGAGCTCCTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCTAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAATGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGTAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGCGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTTTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAACGGCTGTTGGGCATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGTGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCTGAAAATTTGGATTTGGTCGGTTTTGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATACATCGCTCGTGAGCTGTGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.833

98.134

0.371