Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IUD23_RS05585 Genome accession   NZ_CP090316
Coordinates   1235395..1236057 (+) Length   220 a.a.
NCBI ID   WP_038228566.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1230395..1241057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS05565 (IUD23_05565) - 1230635..1231075 (-) 441 WP_020852035.1 ribonuclease domain-containing protein -
  IUD23_RS05570 (IUD23_05570) - 1231317..1231928 (+) 612 WP_020852036.1 superoxide dismutase -
  IUD23_RS05575 (IUD23_05575) - 1232972..1233370 (-) 399 WP_011098322.1 response regulator -
  IUD23_RS05580 (IUD23_05580) - 1234372..1235145 (+) 774 WP_038228739.1 sulfurtransferase -
  IUD23_RS05585 (IUD23_05585) letA 1235395..1236057 (+) 663 WP_038228566.1 response regulator Regulator
  IUD23_RS05590 (IUD23_05590) - 1236503..1239901 (-) 3399 WP_038228569.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23766.86 Da        Isoelectric Point: 6.7142

>NTDB_id=553570 IUD23_RS05585 WP_038228566.1 1235395..1236057(+) (letA) [Xylella fastidiosa subsp. morus strain Riv16]
MTIKIFLVDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKLLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKTI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=553570 IUD23_RS05585 WP_038228566.1 1235395..1236057(+) (letA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGACTATTAAGATTTTTCTGGTTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGT
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAAGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGTTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTGGCTTTAGGGAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCACCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCTGTTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTTGATGTTCGAGATACCATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAACGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

41.475

98.636

0.409
  letA Legionella pneumophila strain ERS1305867

41.475

98.636

0.409