Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LXF06_RS10305 Genome accession   NZ_CP090305
Coordinates   2141454..2142191 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Z503     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136454..2147191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF06_RS10275 yfiL 2136613..2136978 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  LXF06_RS10280 aroF 2137188..2138258 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LXF06_RS10285 tyrA 2138269..2139390 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LXF06_RS10290 pheA 2139433..2140593 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LXF06_RS10295 pheL 2140691..2140738 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LXF06_RS10300 raiA 2140842..2141183 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LXF06_RS10305 comL 2141454..2142191 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LXF06_RS10310 rluD 2142326..2143306 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LXF06_RS10315 yfiH 2143303..2144034 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  LXF06_RS10320 clpC 2144164..2146737 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=553516 LXF06_RS10305 WP_000197686.1 2141454..2142191(-) (comL) [Escherichia coli strain Z503]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=553516 LXF06_RS10305 WP_000197686.1 2141454..2142191(-) (comL) [Escherichia coli strain Z503]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTAGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376