Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | J7U08_RS00040 | Genome accession | NZ_CP072449 |
| Coordinates | 9256..9834 (+) | Length | 192 a.a. |
| NCBI ID | WP_003616385.1 | Uniprot ID | A0A2I1SID3 |
| Organism | Lactobacillus delbrueckii subsp. lactis strain L24754 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1550..39100 | 9256..9834 | within | 0 |
Gene organization within MGE regions
Location: 1550..39100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J7U08_RS00010 (J7U08_00010) | dnaN | 1550..2677 (+) | 1128 | WP_003616390.1 | DNA polymerase III subunit beta | - |
| J7U08_RS00015 (J7U08_00015) | yaaA | 2902..3132 (+) | 231 | WP_003623647.1 | S4 domain-containing protein YaaA | - |
| J7U08_RS00020 (J7U08_00020) | recF | 3132..4277 (+) | 1146 | WP_035162079.1 | DNA replication/repair protein RecF | - |
| J7U08_RS00025 (J7U08_00025) | gyrB | 4261..6222 (+) | 1962 | WP_003616387.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| J7U08_RS00030 (J7U08_00030) | gyrA | 6235..8706 (+) | 2472 | WP_002879428.1 | DNA gyrase subunit A | - |
| J7U08_RS00035 (J7U08_00035) | rpsF | 8922..9215 (+) | 294 | WP_003612647.1 | 30S ribosomal protein S6 | - |
| J7U08_RS00040 (J7U08_00040) | ssb | 9256..9834 (+) | 579 | WP_003616385.1 | single-stranded DNA-binding protein | Machinery gene |
| J7U08_RS00045 (J7U08_00045) | rpsR | 9861..10097 (+) | 237 | WP_002879432.1 | 30S ribosomal protein S18 | - |
| J7U08_RS00050 (J7U08_00050) | - | 10238..12259 (+) | 2022 | WP_002879433.1 | DHH family phosphoesterase | - |
| J7U08_RS00055 (J7U08_00055) | rplI | 12282..12737 (+) | 456 | WP_013438865.1 | 50S ribosomal protein L9 | - |
| J7U08_RS00060 (J7U08_00060) | dnaB | 12761..14131 (+) | 1371 | WP_016396059.1 | replicative DNA helicase | - |
| J7U08_RS00065 (J7U08_00065) | - | 14180..15337 (-) | 1158 | WP_003616382.1 | DUF2974 domain-containing protein | - |
| J7U08_RS00070 (J7U08_00070) | - | 15609..16896 (-) | 1288 | Protein_13 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| J7U08_RS00075 (J7U08_00075) | - | 17264..17422 (+) | 159 | WP_231520548.1 | hypothetical protein | - |
| J7U08_RS00080 (J7U08_00080) | - | 17589..18293 (-) | 705 | WP_138490787.1 | MgtC/SapB family protein | - |
| J7U08_RS00090 (J7U08_00090) | - | 18689..20068 (-) | 1380 | WP_041812154.1 | IS3-like element ISL6 family transposase | - |
| J7U08_RS00095 (J7U08_00095) | - | 20151..20984 (+) | 834 | WP_138491063.1 | helix-turn-helix domain-containing protein | - |
| J7U08_RS00100 (J7U08_00100) | - | 21363..21800 (+) | 438 | WP_207577469.1 | hypothetical protein | - |
| J7U08_RS00105 (J7U08_00105) | - | 21925..22959 (+) | 1035 | WP_074027720.1 | IS30 family transposase | - |
| J7U08_RS00110 (J7U08_00110) | - | 23057..23995 (+) | 939 | WP_138490866.1 | ABC transporter ATP-binding protein | - |
| J7U08_RS00120 (J7U08_00120) | - | 24276..24723 (+) | 448 | Protein_21 | Rrf2 family transcriptional regulator | - |
| J7U08_RS00125 (J7U08_00125) | - | 24819..25118 (+) | 300 | WP_372393392.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| J7U08_RS00130 (J7U08_00130) | - | 25217..25855 (+) | 639 | WP_003616370.1 | ATP-binding cassette domain-containing protein | - |
| J7U08_RS00135 (J7U08_00135) | fetB | 25852..26619 (+) | 768 | WP_002880561.1 | iron export ABC transporter permease subunit FetB | - |
| J7U08_RS00140 (J7U08_00140) | - | 26622..26867 (+) | 246 | WP_003616368.1 | hypothetical protein | - |
| J7U08_RS00145 (J7U08_00145) | - | 27083..28462 (+) | 1380 | WP_041812154.1 | IS3-like element ISL6 family transposase | - |
| J7U08_RS00150 (J7U08_00150) | - | 28550..29704 (-) | 1155 | WP_138490867.1 | SLAP domain-containing protein | - |
| J7U08_RS00155 (J7U08_00155) | - | 29966..30487 (+) | 522 | WP_003612732.1 | GNAT family N-acetyltransferase | - |
| J7U08_RS00160 (J7U08_00160) | - | 30885..31718 (+) | 834 | WP_003612730.1 | pyridoxamine kinase | - |
| J7U08_RS00165 (J7U08_00165) | - | 31754..32311 (+) | 558 | WP_138490868.1 | ECF transporter S component | - |
| J7U08_RS00170 (J7U08_00170) | - | 32338..35103 (-) | 2766 | WP_016396049.1 | DUF3427 domain-containing protein | - |
| J7U08_RS00175 (J7U08_00175) | - | 35252..35974 (+) | 723 | WP_138490869.1 | DUF975 family protein | - |
| J7U08_RS00180 (J7U08_00180) | - | 36170..37495 (+) | 1326 | WP_138490870.1 | RNA-guided endonuclease TnpB family protein | - |
| J7U08_RS00185 (J7U08_00185) | - | 38102..38581 (+) | 480 | WP_138490871.1 | YcxB family protein | - |
| J7U08_RS00190 (J7U08_00190) | - | 38672..39100 (+) | 429 | WP_138490872.1 | Rrf2 family transcriptional regulator | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 20667.31 Da Isoelectric Point: 4.5431
>NTDB_id=553455 J7U08_RS00040 WP_003616385.1 9256..9834(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain L24754]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 579 bp
>NTDB_id=553455 J7U08_RS00040 WP_003616385.1 9256..9834(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain L24754]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.031 |
100 |
0.583 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.396 |
100 |
0.474 |