Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LVJ26_RS09550 Genome accession   NZ_CP090212
Coordinates   1953618..1954274 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain BY68     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948618..1959274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ26_RS09520 (LVJ26_09475) dcyD 1949497..1950483 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  LVJ26_RS09525 (LVJ26_09480) tcyL 1950498..1951166 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  LVJ26_RS09530 (LVJ26_09485) tcyN 1951163..1951915 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  LVJ26_RS09535 (LVJ26_09490) sdiA 1952145..1952867 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  LVJ26_RS09540 (LVJ26_09495) yecF 1952935..1953159 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  LVJ26_RS09545 (LVJ26_09500) yecU 1953146..1953322 (-) 177 WP_000590344.1 protein YecU -
  LVJ26_RS24685 - 1953360..1953476 (-) 117 WP_001302039.1 hypothetical protein -
  LVJ26_RS09550 (LVJ26_09505) letA 1953618..1954274 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  LVJ26_RS09555 (LVJ26_09510) uvrC 1954271..1956103 (+) 1833 WP_032187456.1 excinuclease ABC subunit UvrC Machinery gene
  LVJ26_RS09560 (LVJ26_09515) pgsA 1956160..1956708 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LVJ26_RS09580 (LVJ26_09535) - 1957404..1958144 (-) 741 WP_000440336.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=553428 LVJ26_RS09550 WP_000611335.1 1953618..1954274(+) (letA) [Escherichia coli strain BY68]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=553428 LVJ26_RS09550 WP_000611335.1 1953618..1954274(+) (letA) [Escherichia coli strain BY68]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486